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comparison align_families.xml @ 6:23f5d9316694 draft

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Bugfix in kalign for very diverse read lengths.
author nick
date Thu, 02 Nov 2017 16:24:48 -0400
parents 000969829a5d
children e7b88ffb8294
comparison
equal deleted inserted replaced
5:000969829a5d 6:23f5d9316694
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="align_families" name="Du Novo: Align families" version="2.0.6"> 2 <tool id="align_families" name="Du Novo: Align families" version="2.0.8">
3 <description>of duplex sequencing reads</description> 3 <description>of duplex sequencing reads</description>
4 <requirements> 4 <requirements>
5 <requirement type="package" version="7.221">mafft</requirement> 5 <requirement type="package" version="7.221">mafft</requirement>
6 <requirement type="package" version="2.0.6">dunovo</requirement> 6 <requirement type="package" version="2.0.8">dunovo</requirement>
7 <!-- TODO: require Python 2.7 --> 7 <!-- TODO: require Python 2.7 -->
8 </requirements> 8 </requirements>
9 <version_command>align_families.py --version</version_command> 9 <version_command>align_families.py --version</version_command>
10 <command detect_errors="exit_code">align_families.py --aligner $aligner --galaxy $phone --processes \${GALAXY_SLOTS:-1} '$input' &gt; '$output' 10 <command detect_errors="exit_code">align_families.py --aligner $aligner --galaxy $phone --processes \${GALAXY_SLOTS:-1} '$input' &gt; '$output'
11 </command> 11 </command>