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comparison correct_barcodes.xml @ 6:23f5d9316694 draft

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Bugfix in kalign for very diverse read lengths.
author nick
date Thu, 02 Nov 2017 16:24:48 -0400
parents 000969829a5d
children e7b88ffb8294
comparison
equal deleted inserted replaced
5:000969829a5d 6:23f5d9316694
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="correct_barcodes" name="Du Novo: Correct barcodes" version="2.0.6.1"> 2 <tool id="correct_barcodes" name="Du Novo: Correct barcodes" version="2.0.8">
3 <description>of duplex sequencing reads</description> 3 <description>of duplex sequencing reads</description>
4 <requirements> 4 <requirements>
5 <requirement type="package" version="2.2.5">bowtie2</requirement> 5 <requirement type="package" version="2.2.5">bowtie2</requirement>
6 <requirement type="package" version="0.1.18">samtools</requirement> 6 <requirement type="package" version="0.1.18">samtools</requirement>
7 <requirement type="package" version="1.11">networkx</requirement> 7 <requirement type="package" version="1.10">networkx</requirement>
8 <requirement type="package" version="2.0.6">dunovo</requirement> 8 <requirement type="package" version="2.0.8">dunovo</requirement>
9 <!-- TODO: require Python 2.7 --> 9 <!-- TODO: require Python 2.7 -->
10 </requirements> 10 </requirements>
11 <version_command>correct.py --version</version_command> 11 <version_command>correct.py --version</version_command>
12 <command detect_errors="exit_code"><![CDATA[ 12 <command detect_errors="exit_code"><![CDATA[
13 baralign.sh '$input' refdir correct.sam 13 baralign.sh '$input' refdir correct.sam