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comparison dunovo.xml @ 6:23f5d9316694 draft

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Bugfix in kalign for very diverse read lengths.
author nick
date Thu, 02 Nov 2017 16:24:48 -0400
parents 000969829a5d
children e7b88ffb8294
comparison
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5:000969829a5d 6:23f5d9316694
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="dunovo" name="Du Novo: Make consensus reads" version="2.0.6"> 2 <tool id="dunovo" name="Du Novo: Make consensus reads" version="2.0.8">
3 <description>from duplex sequencing alignments</description> 3 <description>from duplex sequencing alignments</description>
4 <requirements> 4 <requirements>
5 <requirement type="package" version="2.0.6">dunovo</requirement> 5 <requirement type="package" version="2.0.8">dunovo</requirement>
6 <!-- TODO: require Python 2.7 --> 6 <!-- TODO: require Python 2.7 -->
7 </requirements> 7 </requirements>
8 <version_command>dunovo.py --version</version_command> 8 <version_command>dunovo.py --version</version_command>
9 <command detect_errors="exit_code"> 9 <command detect_errors="exit_code">
10 dunovo.py --galaxy $phone --processes \${GALAXY_SLOTS:-1} --min-reads $min_reads --qual $qual_thres --qual-format $qual_format --cons-thres $cons_thres --min-cons-reads $min_cons_reads '$input' --dcs1 '$dcs1' --dcs2 '$dcs2' 10 dunovo.py --galaxy $phone --processes \${GALAXY_SLOTS:-1} --min-reads $min_reads --qual $qual_thres --qual-format $qual_format --cons-thres $cons_thres --min-cons-reads $min_cons_reads '$input' --dcs1 '$dcs1' --dcs2 '$dcs2'