Mercurial > repos > nick > dunovo

comparison dunovo.xml @ 8:658eefb99fd7 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/dunovo commit b'7d364d2b3f4fd9a7787165a883efa122b326d4c2\n'-dirty
author nick
date Fri, 12 Jan 2018 19:18:41 -0500
parents e7b88ffb8294
children fa563fa9b330
comparison
equal deleted inserted replaced
7:e7b88ffb8294 8:658eefb99fd7
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="dunovo" name="Du Novo: Make consensus reads" version="2.0.9"> 2 <tool id="dunovo" name="Du Novo: Make consensus reads" version="2.0.12">
3 <description>from duplex sequencing alignments</description> 3 <description>from duplex sequencing alignments</description>
4 <requirements> 4 <requirements>
5 <requirement type="package" version="2.0.9">dunovo</requirement> 5 <requirement type="package" version="2.0.12">dunovo</requirement>
6 <!-- TODO: require Python 2.7 --> 6 <!-- TODO: require Python 2.7 -->
7 </requirements> 7 </requirements>
8 <version_command>make-consensi.py --version</version_command> 8 <version_command>make-consensi.py --version</version_command>
9 <command detect_errors="exit_code"> 9 <command detect_errors="exit_code">
10 make-consensi.py --galaxy $phone --processes \${GALAXY_SLOTS:-1} --min-reads $min_reads --qual $qual_thres --qual-format $qual_format --cons-thres $cons_thres --min-cons-reads $min_cons_reads '$input' --dcs1 '$dcs1' --dcs2 '$dcs2' 10 make-consensi.py --galaxy $phone --processes \${GALAXY_SLOTS:-1} --min-reads $min_reads --qual $qual_thres --qual-format $qual_format --cons-thres $cons_thres --min-cons-reads $min_cons_reads '$input' --dcs1 '$dcs1' --dcs2 '$dcs2'