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comparison align_families.xml @ 2:a9cb6fb9ea94 draft

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Update to Du Novo 0.7.6.
author nick
date Thu, 24 Aug 2017 02:13:33 -0400
parents ea832c221ec9
children 00dde366870a
comparison
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1:ea832c221ec9 2:a9cb6fb9ea94
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="align_families" name="Du Novo: Align families" version="0.7"> 2 <tool id="align_families" name="Du Novo: Align families" version="0.7.6">
3 <description>of duplex sequencing reads</description> 3 <description>of duplex sequencing reads</description>
4 <requirements> 4 <requirements>
5 <requirement type="package" version="7.221">mafft</requirement> 5 <requirement type="package" version="7.221">mafft</requirement>
6 <requirement type="package" version="0.7.1">dunovo</requirement> 6 <requirement type="package" version="0.7.6">dunovo</requirement>
7 <!-- TODO: require Python 2.7 --> 7 <!-- TODO: require Python 2.7 -->
8 </requirements> 8 </requirements>
9 <command detect_errors="exit_code">align_families.py -p \${GALAXY_SLOTS:-1} '$input' &gt; '$output' 9 <command detect_errors="exit_code">align_families.py --galaxy $phone -p \${GALAXY_SLOTS:-1} '$input' &gt; '$output'
10 </command> 10 </command>
11 <inputs> 11 <inputs>
12 <param name="input" type="data" format="tabular" label="Input reads" help="with barcodes, grouped by family"/> 12 <param name="input" type="data" format="tabular" label="Input reads" help="with barcodes, grouped by family"/>
13 <param name="phone" type="boolean" truevalue="--phone-home" falsevalue="" checked="False" label="Send anonymous usage data" help="Report helpful usage data to the developer, to better understand the use cases and performance of the tool. The only data which will be recorded is the name and version of the tool, the size of the input data, the time taken to process it, and the IP address of the machine running it. No parameters or filenames are sent."/>
13 </inputs> 14 </inputs>
14 <outputs> 15 <outputs>
15 <data name="output" format="tabular"/> 16 <data name="output" format="tabular"/>
16 </outputs> 17 </outputs>
17 <tests> 18 <tests>