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comparison align_families.xml @ 7:e7b88ffb8294 draft

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planemo upload for repository https://github.com/galaxyproject/dunovo commit b'9101e88acb2d3dc022c47e0663fec1f6b9fa58a5\n'-dirty
author nick
date Fri, 10 Nov 2017 09:33:29 -0500
parents 23f5d9316694
children 658eefb99fd7
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6:23f5d9316694 7:e7b88ffb8294
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="align_families" name="Du Novo: Align families" version="2.0.8"> 2 <tool id="align_families" name="Du Novo: Align families" version="2.0.9">
3 <description>of duplex sequencing reads</description> 3 <description>of duplex sequencing reads</description>
4 <requirements> 4 <requirements>
5 <requirement type="package" version="7.221">mafft</requirement> 5 <requirement type="package" version="7.221">mafft</requirement>
6 <requirement type="package" version="2.0.8">dunovo</requirement> 6 <requirement type="package" version="2.0.9">dunovo</requirement>
7 <!-- TODO: require Python 2.7 --> 7 <!-- TODO: require Python 2.7 -->
8 </requirements> 8 </requirements>
9 <version_command>align_families.py --version</version_command> 9 <version_command>align-families.py --version</version_command>
10 <command detect_errors="exit_code">align_families.py --aligner $aligner --galaxy $phone --processes \${GALAXY_SLOTS:-1} '$input' &gt; '$output' 10 <command detect_errors="exit_code">align-families.py --aligner $aligner --galaxy $phone --processes \${GALAXY_SLOTS:-1} '$input' &gt; '$output'
11 </command> 11 </command>
12 <inputs> 12 <inputs>
13 <param name="input" type="data" format="tabular" label="Input reads" help="with barcodes, grouped by family"/> 13 <param name="input" type="data" format="tabular" label="Input reads" help="with barcodes, grouped by family"/>
14 <param name="aligner" type="select" value="mafft" label="Multiple sequence aligner" help="MAFFT is the original aligner Du Novo was published with in 2016. Kalign is much faster and has similar accuracy."> 14 <param name="aligner" type="select" value="mafft" label="Multiple sequence aligner" help="MAFFT is the original aligner Du Novo was published with in 2016. Kalign is much faster and has similar accuracy.">
15 <option value="kalign">Kalign2</option> 15 <option value="kalign">Kalign2</option>