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comparison make_families.xml @ 7:e7b88ffb8294 draft

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planemo upload for repository https://github.com/galaxyproject/dunovo commit b'9101e88acb2d3dc022c47e0663fec1f6b9fa58a5\n'-dirty
author nick
date Fri, 10 Nov 2017 09:33:29 -0500
parents 23f5d9316694
children 658eefb99fd7
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6:23f5d9316694 7:e7b88ffb8294
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="make_families" name="Du Novo: Make families" version="2.0.8"> 2 <tool id="make_families" name="Du Novo: Make families" version="2.0.9">
3 <description>of duplex sequencing reads</description> 3 <description>of duplex sequencing reads</description>
4 <requirements> 4 <requirements>
5 <requirement type="package" version="2.0.8">dunovo</requirement> 5 <requirement type="package" version="2.0.9">dunovo</requirement>
6 </requirements> 6 </requirements>
7 <!-- TODO: Add dependency on coreutils to get paste? --> 7 <!-- TODO: Add dependency on coreutils to get paste? -->
8 <version_command>dunovo.py --version</version_command> 8 <version_command>make-consensi.py --version</version_command>
9 <command detect_errors="exit_code">make-families.sh -t $taglen -i $invariant '$fastq1' '$fastq2' &gt; '$output' 9 <command detect_errors="exit_code">make-families.sh -t $taglen -i $invariant '$fastq1' '$fastq2' &gt; '$output'
10 </command> 10 </command>
11 <inputs> 11 <inputs>
12 <param name="fastq1" type="data" format="fastq" label="Sequencing reads, mate 1"/> 12 <param name="fastq1" type="data" format="fastq" label="Sequencing reads, mate 1"/>
13 <param name="fastq2" type="data" format="fastq" label="Sequencing reads, mate 2"/> 13 <param name="fastq2" type="data" format="fastq" label="Sequencing reads, mate 2"/>