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comparison make_families.xml @ 9:fa563fa9b330 draft

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planemo upload for repository https://github.com/galaxyproject/dunovo commit b'74b84167148cb0a0d7c6ac83123e8c957f85fe37\n'-dirty
author nick
date Fri, 23 Mar 2018 22:26:23 -0400
parents 658eefb99fd7
children 9dc43bf7d1db
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8:658eefb99fd7 9:fa563fa9b330
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="make_families" name="Du Novo: Make families" version="2.0.12"> 2 <tool id="make_families" name="Du Novo: Make families" version="2.14">
3 <description>of duplex sequencing reads</description> 3 <description>of duplex sequencing reads</description>
4 <requirements> 4 <requirements>
5 <requirement type="package" version="2.0.12">dunovo</requirement> 5 <requirement type="package" version="2.14">dunovo</requirement>
6 </requirements> 6 </requirements>
7 <!-- TODO: Add dependency on coreutils to get paste? --> 7 <!-- TODO: Add dependency on coreutils to get paste? -->
8 <version_command>make-consensi.py --version</version_command> 8 <version_command>make-consensi.py --version</version_command>
9 <command detect_errors="exit_code">make-families.sh -t $taglen -i $invariant '$fastq1' '$fastq2' &gt; '$output' 9 <command detect_errors="exit_code">make-families.sh -t $taglen -i $invariant '$fastq1' '$fastq2' &gt; '$output'
10 </command> 10 </command>
11 <inputs> 11 <inputs>
12 <param name="fastq1" type="data" format="fastq" label="Sequencing reads, mate 1"/> 12 <param name="fastq1" type="data" format="fastq" label="Sequencing reads, mate 1"/>
13 <param name="fastq2" type="data" format="fastq" label="Sequencing reads, mate 2"/> 13 <param name="fastq2" type="data" format="fastq" label="Sequencing reads, mate 2"/>
14 <param name="taglen" type="integer" value="12" min="0" label="Tag length" help="length of each random barcode on the ends of the fragments"/> 14 <param name="taglen" type="integer" value="12" min="0" label="Tag length" help="Length of each random barcode on the ends of the fragments."/>
15 <param name="invariant" type="integer" value="5" min="0" label="Invariant sequence length" help="length of the sequence between the tag and actual sample sequence (the restriction site, normally)"/> 15 <param name="invariant" type="integer" value="5" min="0" label="Invariant sequence length" help="Length of the sequence between the tag and actual sample sequence (the restriction site, normally)."/>
16 </inputs> 16 </inputs>
17 <outputs> 17 <outputs>
18 <data name="output" format="tabular"/> 18 <data name="output" format="tabular"/>
19 </outputs> 19 </outputs>
20 <tests> 20 <tests>