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comparison align_families.xml @ 11:0f8e0dc73d1d draft default tip

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"planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty"
author nick
date Wed, 16 Feb 2022 22:59:00 +0000
parents 9dc43bf7d1db
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10:9dc43bf7d1db 11:0f8e0dc73d1d
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="align_families" name="Du Novo: Align families" version="2.15"> 2 <tool id="align_families" name="Du Novo: Align families" version="3.0.2">
3 <description>of duplex sequencing reads</description> 3 <description>of duplex sequencing reads</description>
4 <requirements> 4 <requirements>
5 <requirement type="package" version="7.221">mafft</requirement> 5 <requirement type="package" version="3.0.2">dunovo</requirement>
6 <requirement type="package" version="2.15">dunovo</requirement>
7 <!-- TODO: require Python 2.7 -->
8 </requirements> 6 </requirements>
9 <version_command>align-families.py --version</version_command> 7 <version_command>align-families.py --version</version_command>
10 <command detect_errors="exit_code">align-families.py $check_ids --aligner $aligner --galaxy $phone --processes \${GALAXY_SLOTS:-1} '$input' &gt; '$output' 8 <command detect_errors="exit_code">align-families.py $check_ids --aligner $aligner --galaxy $phone --processes \${GALAXY_SLOTS:-1} '$input' &gt; '$output'
11 </command> 9 </command>
12 <inputs> 10 <inputs>
26 <param name="input" value="smoke.families.tsv"/> 24 <param name="input" value="smoke.families.tsv"/>
27 <output name="output" file="smoke.families.aligned.tsv"/> 25 <output name="output" file="smoke.families.aligned.tsv"/>
28 </test> 26 </test>
29 <test> 27 <test>
30 <param name="input" value="families.sort.tsv"/> 28 <param name="input" value="families.sort.tsv"/>
29 <param name="check_ids" value="--no-check-ids"/>
31 <output name="output" file="families.msa.tsv"/> 30 <output name="output" file="families.msa.tsv"/>
32 </test> 31 </test>
33 </tests> 32 </tests>
34 <help> 33 <help>
35 34