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comparison make_families.xml @ 11:0f8e0dc73d1d draft default tip

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"planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty"
author nick
date Wed, 16 Feb 2022 22:59:00 +0000
parents 9dc43bf7d1db
children
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10:9dc43bf7d1db 11:0f8e0dc73d1d
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="make_families" name="Du Novo: Make families" version="2.15"> 2 <tool id="make_families" name="Du Novo: Make families" version="3.0.2">
3 <description>of duplex sequencing reads</description> 3 <description>of duplex sequencing reads</description>
4 <requirements> 4 <requirements>
5 <requirement type="package" version="2.15">dunovo</requirement> 5 <requirement type="package" version="3.0.2">dunovo</requirement>
6 </requirements> 6 </requirements>
7 <!-- TODO: Add dependency on coreutils to get paste? -->
8 <version_command>make-consensi.py --version</version_command> 7 <version_command>make-consensi.py --version</version_command>
9 <command detect_errors="exit_code">make-families.sh -t $taglen -i $invariant '$fastq1' '$fastq2' &gt; '$output' 8 <command detect_errors="exit_code">make-families.sh -t $taglen -i $invariant '$fastq1' '$fastq2' &gt; '$output'
10 </command> 9 </command>
11 <inputs> 10 <inputs>
12 <param name="fastq1" type="data" format="fastq" label="Sequencing reads, mate 1"/> 11 <param name="fastq1" type="data" format="fastq" label="Sequencing reads, mate 1"/>
19 </outputs> 18 </outputs>
20 <tests> 19 <tests>
21 <test> 20 <test>
22 <param name="fastq1" value="smoke_1.fq"/> 21 <param name="fastq1" value="smoke_1.fq"/>
23 <param name="fastq2" value="smoke_2.fq"/> 22 <param name="fastq2" value="smoke_2.fq"/>
24 <param name="taglen" value="5"/> 23 <param name="taglen" value="4"/>
25 <param name="invariant" value="1"/> 24 <param name="invariant" value="1"/>
26 <output name="output" file="smoke.families.tsv"/> 25 <output name="output" file="smoke.families.tsv"/>
27 </test> 26 </test>
28 <test> 27 <test>
29 <param name="fastq1" value="smoke_1.fq"/> 28 <param name="fastq1" value="smoke_1.fq"/>
30 <param name="fastq2" value="smoke_2.fq"/> 29 <param name="fastq2" value="smoke_2.fq"/>
31 <param name="taglen" value="5"/> 30 <param name="taglen" value="4"/>
32 <param name="invariant" value="0"/> 31 <param name="invariant" value="0"/>
33 <output name="output" file="smoke.families.i0.tsv"/> 32 <output name="output" file="smoke.families.i0.tsv"/>
34 </test> 33 </test>
35 </tests> 34 </tests>
36 <help> 35 <help>