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diff correct_barcodes.xml @ 3:00dde366870a draft

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planemo upload for repository https://github.com/galaxyproject/dunovo commit b'a3ad9fbb3f010253808fc0c7329897a741ec9feb\n'
author nick
date Mon, 11 Sep 2017 16:59:44 -0400
parents a9cb6fb9ea94
children 5fbeaa41b223
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--- a/correct_barcodes.xml	Thu Aug 24 02:13:33 2017 -0400
+++ b/correct_barcodes.xml	Mon Sep 11 16:59:44 2017 -0400
@@ -1,17 +1,17 @@
 <?xml version="1.0"?>
-<tool id="correct_barcodes" name="Du Novo: Correct barcodes" version="0.7.6">
+<tool id="correct_barcodes" name="Du Novo: Correct barcodes" version="0.8.1">
   <description>of duplex sequencing reads</description>
   <requirements>
     <requirement type="package" version="2.2.5">bowtie2</requirement>
     <requirement type="package" version="0.1.18">samtools</requirement>
     <requirement type="package" version="1.9">networkx</requirement>
-    <requirement type="package" version="0.7.6">dunovo</requirement>
+    <requirement type="package" version="0.8.1">dunovo</requirement>
     <!-- TODO: require Python 2.7 -->
   </requirements>
   <command detect_errors="exit_code"><![CDATA[
     baralign.sh '$input' refdir barcodes.bam
     && samtools view -f 256 barcodes.bam
-    | correct.py --galaxy $phone -d $dist -m $mapq -p $pos '$input' refdir/barcodes.fa
+    | correct.py --galaxy $phone --dist $dist --mapq $mapq --pos $pos '$input' refdir/barcodes.fa
     | sort
     > '$output'
   ]]>