Mercurial > repos > nick > dunovo
diff correct_barcodes.xml @ 3:00dde366870a draft
planemo upload for repository https://github.com/galaxyproject/dunovo commit b'a3ad9fbb3f010253808fc0c7329897a741ec9feb\n'
author | nick |
---|---|
date | Mon, 11 Sep 2017 16:59:44 -0400 |
parents | a9cb6fb9ea94 |
children | 5fbeaa41b223 |
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--- a/correct_barcodes.xml Thu Aug 24 02:13:33 2017 -0400 +++ b/correct_barcodes.xml Mon Sep 11 16:59:44 2017 -0400 @@ -1,17 +1,17 @@ <?xml version="1.0"?> -<tool id="correct_barcodes" name="Du Novo: Correct barcodes" version="0.7.6"> +<tool id="correct_barcodes" name="Du Novo: Correct barcodes" version="0.8.1"> <description>of duplex sequencing reads</description> <requirements> <requirement type="package" version="2.2.5">bowtie2</requirement> <requirement type="package" version="0.1.18">samtools</requirement> <requirement type="package" version="1.9">networkx</requirement> - <requirement type="package" version="0.7.6">dunovo</requirement> + <requirement type="package" version="0.8.1">dunovo</requirement> <!-- TODO: require Python 2.7 --> </requirements> <command detect_errors="exit_code"><![CDATA[ baralign.sh '$input' refdir barcodes.bam && samtools view -f 256 barcodes.bam - | correct.py --galaxy $phone -d $dist -m $mapq -p $pos '$input' refdir/barcodes.fa + | correct.py --galaxy $phone --dist $dist --mapq $mapq --pos $pos '$input' refdir/barcodes.fa | sort > '$output' ]]>