Mercurial > repos > nick > dunovo
diff dunovo.xml @ 9:fa563fa9b330 draft
planemo upload for repository https://github.com/galaxyproject/dunovo commit b'74b84167148cb0a0d7c6ac83123e8c957f85fe37\n'-dirty
author | nick |
---|---|
date | Fri, 23 Mar 2018 22:26:23 -0400 |
parents | 658eefb99fd7 |
children | 9dc43bf7d1db |
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--- a/dunovo.xml Fri Jan 12 19:18:41 2018 -0500 +++ b/dunovo.xml Fri Mar 23 22:26:23 2018 -0400 @@ -1,8 +1,8 @@ <?xml version="1.0"?> -<tool id="dunovo" name="Du Novo: Make consensus reads" version="2.0.12"> +<tool id="dunovo" name="Du Novo: Make consensus reads" version="2.14"> <description>from duplex sequencing alignments</description> <requirements> - <requirement type="package" version="2.0.12">dunovo</requirement> + <requirement type="package" version="2.14">dunovo</requirement> <!-- TODO: require Python 2.7 --> </requirements> <version_command>make-consensi.py --version</version_command> @@ -14,7 +14,7 @@ </command> <inputs> <param name="input" type="data" format="tabular" label="Aligned input reads" /> - <param name="min_reads" type="integer" value="3" min="1" label="Minimum reads per family" help="Single-strand families with fewer than this many reads will be skipped."/> + <param name="min_reads" type="integer" value="3" min="1" label="Minimum reads for a consensus" help="This many reads are necessary to form a single-strand consensus sequence. Families smaller than this will be skipped."/> <param name="cons_thres" type="float" value="0.5" min="0.5" max="1.0" label="Consensus % threshold" help="The consensus base must be present in more than this fraction of the reads, or "N" will be used."/> <param name="min_cons_reads" type="integer" value="0" min="0" label="Minimum number of reads for a consensus base." help="If no base at the position appears in at least this many reads, "N" will be used."/> <param name="qual_thres" type="integer" value="25" min="1" label="Minimum base quality" help="Bases with a PHRED score less than this will not be counted in the consensus making."/>