diff dunovo.xml @ 9:fa563fa9b330 draft

planemo upload for repository https://github.com/galaxyproject/dunovo commit b'74b84167148cb0a0d7c6ac83123e8c957f85fe37\n'-dirty
author nick
date Fri, 23 Mar 2018 22:26:23 -0400
parents 658eefb99fd7
children 9dc43bf7d1db
line wrap: on
line diff
--- a/dunovo.xml	Fri Jan 12 19:18:41 2018 -0500
+++ b/dunovo.xml	Fri Mar 23 22:26:23 2018 -0400
@@ -1,8 +1,8 @@
 <?xml version="1.0"?>
-<tool id="dunovo" name="Du Novo: Make consensus reads" version="2.0.12">
+<tool id="dunovo" name="Du Novo: Make consensus reads" version="2.14">
   <description>from duplex sequencing alignments</description>
   <requirements>
-    <requirement type="package" version="2.0.12">dunovo</requirement>
+    <requirement type="package" version="2.14">dunovo</requirement>
     <!-- TODO: require Python 2.7 -->
   </requirements>
   <version_command>make-consensi.py --version</version_command>
@@ -14,7 +14,7 @@
   </command>
   <inputs>
     <param name="input" type="data" format="tabular" label="Aligned input reads" />
-    <param name="min_reads" type="integer" value="3" min="1" label="Minimum reads per family" help="Single-strand families with fewer than this many reads will be skipped."/>
+    <param name="min_reads" type="integer" value="3" min="1" label="Minimum reads for a consensus" help="This many reads are necessary to form a single-strand consensus sequence. Families smaller than this will be skipped."/>
     <param name="cons_thres" type="float" value="0.5" min="0.5" max="1.0" label="Consensus % threshold" help="The consensus base must be present in more than this fraction of the reads, or &quot;N&quot; will be used."/>
     <param name="min_cons_reads" type="integer" value="0" min="0" label="Minimum number of reads for a consensus base." help="If no base at the position appears in at least this many reads, &quot;N&quot; will be used."/>
     <param name="qual_thres" type="integer" value="25" min="1" label="Minimum base quality" help="Bases with a PHRED score less than this will not be counted in the consensus making."/>