--- a/tool_dependencies.xml	Fri Jan 12 19:18:41 2018 -0500
+++ b/tool_dependencies.xml	Fri Mar 23 22:26:23 2018 -0400
@@ -9,12 +9,22 @@
   <package name="networkx" version="1.10">
     <repository changeset_revision="e761775277c1" name="package_networkx_1_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
   </package>
-  <package name="dunovo" version="2.0.12">
+  <package name="dunovo" version="2.14">
     <install version="1.0">
       <actions>
         <!-- download the main dunovo package files -->
-        <action sha256sum="6973f163dabf82d236982534d88b5d11573a5aa0982bf9d6236be635fb9b4e11" type="download_by_url">https://github.com/galaxyproject/dunovo/archive/v2.0.12.tar.gz</action>
+        <action sha256sum="e517a12794e7cac31b4ebcad99e6a6c0789027ace7d33f89d06ff2bc961515fc" type="download_by_url">https://github.com/galaxyproject/dunovo/archive/v2.14.tar.gz</action>
         <!-- TODO: Store dunovo version number in variable instead of hardcoding it everywhere. -->
+        <!-- Move precheck.py and its dependencies into the main source directory. -->
+        <action type="move_file">
+          <source>utils/precheck.py</source>
+          <destination>$TMP_WORK_DIR/dunovo-2.14</destination>
+        </action>
+        <action type="move_file">
+          <source>utils/getreads.py</source>
+          <destination>$TMP_WORK_DIR/dunovo-2.14</destination>
+        </action>
+        <!-- install submodules -->
         <action type="shell_command">rmdir kalign utillib ET</action>
         <!-- download the utillib submodule -->
         <action type="download_file">https://github.com/NickSto/utillib/archive/v0.1.0.tar.gz</action>
@@ -22,7 +32,7 @@
         <action type="shell_command">rm v0.1.0.tar.gz</action>
         <action rename_to="utillib" type="move_file">
           <source>utillib-0.1.0</source>
-          <destination>$TMP_WORK_DIR/dunovo-2.0.12</destination>
+          <destination>$TMP_WORK_DIR/dunovo-2.14</destination>
         </action>
         <!-- download the kalign submodule -->
         <action type="download_file">https://github.com/makrutenko/kalign-dunovo/archive/v0.2.0.tar.gz</action>
@@ -30,7 +40,7 @@
         <action type="shell_command">rm v0.2.0.tar.gz</action>
         <action rename_to="kalign" type="move_file">
           <source>kalign-dunovo-0.2.0</source>
-          <destination>$TMP_WORK_DIR/dunovo-2.0.12</destination>
+          <destination>$TMP_WORK_DIR/dunovo-2.14</destination>
         </action>
         <!-- download the ET submodule -->
         <action type="download_file">https://github.com/NickSto/ET/archive/v0.2.2.tar.gz</action>
@@ -38,7 +48,7 @@
         <action type="shell_command">rm v0.2.2.tar.gz</action>
         <action rename_to="ET" type="move_file">
           <source>ET-0.2.2</source>
-          <destination>$TMP_WORK_DIR/dunovo-2.0.12</destination>
+          <destination>$TMP_WORK_DIR/dunovo-2.14</destination>
         </action>
         <!-- make and install -->
         <action type="shell_command">make clean</action>