Mercurial > repos > nick > dunovo

diff make_families.xml @ 11:0f8e0dc73d1d draft default tip

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"planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty"
author nick
date Wed, 16 Feb 2022 22:59:00 +0000
parents 9dc43bf7d1db
children
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--- a/make_families.xml	Fri Jun 01 17:55:23 2018 -0400
+++ b/make_families.xml	Wed Feb 16 22:59:00 2022 +0000
@@ -1,10 +1,9 @@
 <?xml version="1.0"?>
-<tool id="make_families" name="Du Novo: Make families" version="2.15">
+<tool id="make_families" name="Du Novo: Make families" version="3.0.2">
   <description>of duplex sequencing reads</description>
   <requirements>
-    <requirement type="package" version="2.15">dunovo</requirement>
+    <requirement type="package" version="3.0.2">dunovo</requirement>
   </requirements>
-  <!-- TODO: Add dependency on coreutils to get paste? -->
   <version_command>make-consensi.py --version</version_command>
   <command detect_errors="exit_code">make-families.sh -t $taglen -i $invariant '$fastq1' '$fastq2' &gt; '$output'
   </command>
@@ -21,14 +20,14 @@
     <test>
       <param name="fastq1" value="smoke_1.fq"/>
       <param name="fastq2" value="smoke_2.fq"/>
-      <param name="taglen" value="5"/>
+      <param name="taglen" value="4"/>
       <param name="invariant" value="1"/>
       <output name="output" file="smoke.families.tsv"/>
     </test>
     <test>
       <param name="fastq1" value="smoke_1.fq"/>
       <param name="fastq2" value="smoke_2.fq"/>
-      <param name="taglen" value="5"/>
+      <param name="taglen" value="4"/>
       <param name="invariant" value="0"/>
       <output name="output" file="smoke.families.i0.tsv"/>
     </test>