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view tool_dependencies.xml @ 6:23f5d9316694 draft

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Bugfix in kalign for very diverse read lengths.
author nick
date Thu, 02 Nov 2017 16:24:48 -0400
parents 5fbeaa41b223
children e7b88ffb8294
line wrap: on
line source

<?xml version="1.0"?>
<tool_dependency>
  <package name="bowtie2" version="2.2.5">
    <repository changeset_revision="30bd7eaeddbf" name="package_bowtie_2_2_5" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
  </package>
  <package name="samtools" version="0.1.18">
    <repository changeset_revision="1409782220c9" name="package_samtools_0_1_18" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
  </package>
  <package name="mafft" version="7.221">
    <repository changeset_revision="15974dd17515" name="mafft" owner="rnateam" toolshed="https://toolshed.g2.bx.psu.edu" />
  </package>
  <package name="networkx" version="1.10">
    <repository changeset_revision="e761775277c1" name="package_networkx_1_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
  </package>
  <package name="dunovo" version="2.0.8">
    <install version="1.0">
      <actions>
        <action sha256sum="4c105e29eff271b9e32f12c5d2862b717ba960981f4820dae26e159e2a0ed33d" type="download_by_url">https://github.com/galaxyproject/dunovo/archive/v2.0.8.tar.gz</action>
        <action type="shell_command">make</action>
        <action type="move_directory_files">
          <source_directory>.</source_directory>
          <destination_directory>$INSTALL_DIR</destination_directory>
        </action>
        <action type="set_environment">
          <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
        </action>
        <!-- Note: This does not install the submodules.
        Functionality they provide will not be available. -->
      </actions>
    </install>
  </package>
</tool_dependency>