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comparison align_families.xml @ 5:4bc49a5769ee draft

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Version 0.5: Split interleaved SSCS output file into two paired files.
author nick
date Thu, 01 Dec 2016 23:22:52 -0500
parents 7f513b9b1b1e
children 9a0bee12b583
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4:7f513b9b1b1e 5:4bc49a5769ee
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="align_families" name="Du Novo: Align families" version="0.3"> 2 <tool id="align_families" name="Du Novo: Align families" version="0.5">
3 <description>of duplex sequencing reads</description> 3 <description>of duplex sequencing reads</description>
4 <requirements> 4 <requirements>
5 <requirement type="package" version="7.221">mafft</requirement> 5 <requirement type="package" version="7.221">mafft</requirement>
6 <requirement type="package" version="0.3">duplex</requirement> 6 <requirement type="package" version="0.5">duplex</requirement>
7 <requirement type="set_environment">DUPLEX_DIR</requirement> 7 <requirement type="set_environment">DUPLEX_DIR</requirement>
8 <!-- TODO: require Python 2.7 --> 8 <!-- TODO: require Python 2.7 -->
9 </requirements> 9 </requirements>
10 <command detect_errors="exit_code">python \$DUPLEX_DIR/align_families.py -p \${GALAXY_SLOTS:-1} $input &gt; $output 10 <command detect_errors="exit_code">python \$DUPLEX_DIR/align_families.py -p \${GALAXY_SLOTS:-1} $input &gt; $output
11 </command> 11 </command>