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comparison align_families.xml @ 4:7f513b9b1b1e draft

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Change names to dunovo, use newer Github release.
author nick
date Mon, 21 Dec 2015 14:47:48 -0500
parents aedbdf8ce1af
children 4bc49a5769ee
comparison
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3:aedbdf8ce1af 4:7f513b9b1b1e
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="align_families" name="Du Novo: Align families" version="0.2"> 2 <tool id="align_families" name="Du Novo: Align families" version="0.3">
3 <description>of duplex sequencing reads</description> 3 <description>of duplex sequencing reads</description>
4 <requirements> 4 <requirements>
5 <requirement type="package" version="7.221">mafft</requirement> 5 <requirement type="package" version="7.221">mafft</requirement>
6 <requirement type="package" version="0.2">duplex</requirement> 6 <requirement type="package" version="0.3">duplex</requirement>
7 <requirement type="set_environment">DUPLEX_DIR</requirement> 7 <requirement type="set_environment">DUPLEX_DIR</requirement>
8 <!-- TODO: require Python 2.7 -->
8 </requirements> 9 </requirements>
9 <command detect_errors="exit_code">python \$DUPLEX_DIR/align_families.py -p \${GALAXY_SLOTS:-1} $input &gt; $output 10 <command detect_errors="exit_code">python \$DUPLEX_DIR/align_families.py -p \${GALAXY_SLOTS:-1} $input &gt; $output
10 </command> 11 </command>
11 <inputs> 12 <inputs>
12 <param name="input" type="data" format="tabular" label="Input reads" help="with barcodes, grouped by family"/> 13 <param name="input" type="data" format="tabular" label="Input reads" help="with barcodes, grouped by family"/>