Mercurial > repos > nicolas > oghma
annotate beagle_impute.xml @ 103:e7115e44d8d8 draft default tip
Uploaded
| author | nicolas |
|---|---|
| date | Mon, 31 Oct 2016 07:20:49 -0400 |
| parents | 4e97cb4310ac |
| children |
| rev | line source |
|---|---|
| 19 | 1 <tool id="Beagle_impute" name="Beagle_impute" > |
| 2 <description> beagle as a imputation tools, required phased reference file in VCF format</description> | |
| 3 <command interpreter="bash">beagle_impute.sh $vcf_input $reference </command> | |
| 4 <inputs> | |
| 5 <param format="vcf" name="vcf_input" type="data" label="VCF file to impute"/> | |
| 6 <param format="vcf" name="reference" type="data" label="reference file"/> | |
| 7 </inputs> | |
| 8 <outputs> | |
| 9 <data format="vcf" name="vcf_ouput" label="Phased and imputed VCF" from_work_dir="out_imputed.vcf.gz"/> | |
| 10 <data format="txt" name="log" label="Beagle log file" from_work_dir="out.log"/> | |
| 11 </outputs> | |
| 12 | |
| 13 </tool> |