Mercurial > repos > nicolas > oghma

diff beagle_phase.sh @ 25:10afd4b2847b draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author nicolas
date Tue, 25 Oct 2016 14:33:02 -0400
parents f9a3d6a36ca5
children
line wrap: on
line diff
--- a/beagle_phase.sh	Tue Oct 25 14:32:06 2016 -0400
+++ b/beagle_phase.sh	Tue Oct 25 14:33:02 2016 -0400
@@ -1,17 +1,14 @@
 #!/bin/bash
 
-
+# variable affectation
 vcf_input=$1
 out="out_phased"
 
+# create temporary directory
 directory=`dirname $0`
-
 mkdir tmpdir$$
-
 cp -rf $vcf_input tmpdir$$/input.vcf
-
-
+# launch beagle
 java -jar $directory/beagle.jar gt=$vcf_input out=$out
-
-
+# remove temporary directory
 rm -rf tmpdir$$
\ No newline at end of file