# HG changeset patch
# User nicolas
# Date 1477420382 14400
# Node ID 10afd4b2847badfb0a50fae41ad8173cf7bb62ed
# Parent  79abc9d003404cd5ab6c17b8876e6257948048cf
Uploaded

diff -r 79abc9d00340 -r 10afd4b2847b beagle_phase.sh
--- a/beagle_phase.sh	Tue Oct 25 14:32:06 2016 -0400
+++ b/beagle_phase.sh	Tue Oct 25 14:33:02 2016 -0400
@@ -1,17 +1,14 @@
 #!/bin/bash
 
-
+# variable affectation
 vcf_input=$1
 out="out_phased"
 
+# create temporary directory
 directory=`dirname $0`
-
 mkdir tmpdir$$
-
 cp -rf $vcf_input tmpdir$$/input.vcf
-
-
+# launch beagle
 java -jar $directory/beagle.jar gt=$vcf_input out=$out
-
-
+# remove temporary directory
 rm -rf tmpdir$$
\ No newline at end of file