# HG changeset patch
# User nicolas
# Date 1477045866 14400
# Node ID 4e97cb4310acba86cc93f92ae4c61ca292c48a00
# Parent  27fb6c2a98a3a130eba6a4aa1019f2daddac7488
Uploaded

diff -r 27fb6c2a98a3 -r 4e97cb4310ac beagle_impute.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/beagle_impute.xml	Fri Oct 21 06:31:06 2016 -0400
@@ -0,0 +1,13 @@
+<tool id="Beagle_impute" name="Beagle_impute" >
+	<description> beagle as a imputation tools, required phased reference file in VCF format</description>
+	<command interpreter="bash">beagle_impute.sh $vcf_input $reference </command>
+	<inputs>
+		<param format="vcf" name="vcf_input" type="data" label="VCF file to impute"/>
+		<param format="vcf" name="reference" type="data" label="reference file"/>
+	</inputs>
+	<outputs>
+		<data format="vcf" name="vcf_ouput" label="Phased and imputed VCF" from_work_dir="out_imputed.vcf.gz"/>
+		<data format="txt" name="log" label="Beagle log file" from_work_dir="out.log"/>
+	</outputs>
+	
+	</tool>
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