# HG changeset patch
# User nicolas
# Date 1477420878 14400
# Node ID 6b5c0c7b4585395adc763461c322309e1ec89a96
# Parent  d961f726b619a65e415378a17450ebd9541bc447
Uploaded

diff -r d961f726b619 -r 6b5c0c7b4585 plotPrediction.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/plotPrediction.xml	Tue Oct 25 14:41:18 2016 -0400
@@ -0,0 +1,36 @@
+<tool id="plotPrediction" name="plot prediction" version="1.0.0">
+  <description>shows scatterplot of a prediction vs true phenotype</description>
+  <command interpreter="Rscript">
+	  plotPrediction.R $config
+  </command>
+  
+  <inputs>
+	<param name="phenotype" type="data"
+		label="true phenotype" 
+	/>
+		  
+	<param name="predictedPhenotype" type="data"
+			label="predicted phenotype" 
+			/>
+			
+  </inputs>
+  
+  <configfiles>
+    <configfile name="config">
+## Desc: this file is sourced in encode wrapper script
+##  as means to pass all galaxy params to R
+"${predictedPhenotype}" -> predicted
+"${phenotype}" -> phenotype
+"${r2}" -> out
+
+    </configfile>
+</configfiles>
+  
+<outputs>
+	<data format="pdf" name = "r2" />
+</outputs>
+  
+  <help>
+	  draw R2 of prediction vs true phenotype
+  </help>
+  </tool>
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