# HG changeset patch
# User nicolas
# Date 1477045785 14400
# Node ID 9178c17023aad35cf51221c625862b31506d78ab
# Parent  4d21b6806e1928d24eec9aac5e1d4fe10b16ab1a
Uploaded

diff -r 4d21b6806e19 -r 9178c17023aa rrBLUP.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/rrBLUP.xml	Fri Oct 21 06:29:45 2016 -0400
@@ -0,0 +1,39 @@
+<tool id="rrBLUP" name="rrBLUP" version="1.0.0">
+  <description>predict phenotype using a rrBLUP approach</description>
+  <command interpreter="Rscript">
+	  rrBLUP.R $config &gt; ${output1}
+  </command>
+  
+  <inputs>
+	<param name="genotype" type="data"
+		label="genotype data" help="a tabular datatype containing the encoded genotypes" 
+	/>
+		  
+	<param name="phenotype" type="data"
+			label="phenotype data" help=" a tabular datatype containing the phenotypes " 
+			/>
+		
+	<param name="model" type="text"
+			label="path to the output folds" help= " a path to a file where the results (depending on the chosen mode) will be writen" 
+	/>
+  </inputs>
+  
+  <configfiles>
+    <configfile name="config">
+## Desc: this file is sourced in encode wrapper script
+##  as means to pass all galaxy params to R
+"${genotype}" -> genotype
+"${phenotype}" -> phenotype
+"${model}" -> out
+
+    </configfile>
+</configfiles>
+  
+<outputs>
+	<data format="tabular" name = "output1" label="rrBLUP output" />
+</outputs>
+  
+  <help>
+	  make the classification using the rrBLUP method
+  </help>
+  </tool>
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