<tool id="annovar_yaml" name="Annovar YAML" version="1.1">
    <requirements>
        <requirement type="package" version="5.22.0">perl</requirement>
        <requirement type="package" version="1.24">perl-yaml</requirement>
        <requirement type="package" version="1.70">perl-yaml-tiny</requirement>
        <requirement type="package" version="0.74">perl-yaml-xs</requirement>
        <requirement type="package" version="2.161">perl-data-dumper</requirement>
        <requirement type="package" version="2.50">perl-getopt-long</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
        which perl && perl $__tool_directory__/annovar_yaml.pl --invcf $vcf --inyml $yaml --outvcf $output
    ]]></command>

    <inputs>

        <param type="data" name="yaml" format="txt" />
        <param type="data" name="vcf" format="vcf" />

    </inputs>
    <outputs>
        <data name="output" format="vcf"/>
    </outputs>
    <help><![CDATA[
        TODO: Fill in help for Annovar YAML tool. perl 5.22
    ]]></help>
</tool>