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1 <tool id="bowtiebuild" name="Bowtie Indexing">
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2 <description>Build index for Bowtie alignment</description>
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3
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4 <requirements>
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5 <requirement type="perl-module">bowtie_build_wrapper.pl</requirement>
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6 </requirements>
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7
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8 <command interpreter="perl">
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9 ./bowtie_build_wrapper.pl $fastafile "$output.files_path" $output "$fastafile.name"
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10 </command>
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11
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12 <inputs>
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13 <param format="fasta" name="fastafile" type="data" optional="false" label="Fasta reference file" help="Reference file in fasta format"/>
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14 </inputs>
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15
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16 <outputs>
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17 <data format="bowtie_html_index" name="output"/>
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18 </outputs>
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19
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20 <help>
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21 </help>
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22 </tool>
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