comparison mirdeep2/bowtie_build.xml @ 0:5b9519f4b165

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author nikhil-joshi
date Mon, 19 Sep 2011 19:04:41 -0400
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1 <tool id="bowtiebuild" name="Bowtie Indexing">
2 <description>Build index for Bowtie alignment</description>
3
4 <requirements>
5 <requirement type="perl-module">bowtie_build_wrapper.pl</requirement>
6 </requirements>
7
8 <command interpreter="perl">
9 ./bowtie_build_wrapper.pl $fastafile "$output.files_path" $output "$fastafile.name"
10 </command>
11
12 <inputs>
13 <param format="fasta" name="fastafile" type="data" optional="false" label="Fasta reference file" help="Reference file in fasta format"/>
14 </inputs>
15
16 <outputs>
17 <data format="bowtie_html_index" name="output"/>
18 </outputs>
19
20 <help>
21 </help>
22 </tool>