Mercurial > repos > nikhil-joshi > mirdeep2_and_targetspy

diff mirdeep2/target_spy_wrapper.sh @ 0:5b9519f4b165

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author nikhil-joshi
date Mon, 19 Sep 2011 19:04:41 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/mirdeep2/target_spy_wrapper.sh	Mon Sep 19 19:04:41 2011 -0400
@@ -0,0 +1,4 @@
+export PATH=/share/apps/ViennaRNA-1.6.1/bin:/share/apps/TargetSpy/bin:$PATH
+
+TargetSpy -microRNAs $1 -transcripts $2 -result targets
+gunzip targets.gz