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diff bcftools_cat.xml @ 2:14567aa2be12 draft default tip

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Added wrapper script for correct stderr handling
author geert-vandeweyer
date Thu, 10 Apr 2014 09:44:09 -0400
parents f2d331bf3d38
children
line wrap: on
line diff
--- a/bcftools_cat.xml	Thu Jul 11 14:27:32 2013 -0500
+++ b/bcftools_cat.xml	Thu Apr 10 09:44:09 2014 -0400
@@ -5,7 +5,7 @@
         <requirements type="package">samtools</requirements>
   </requirements>
 
-  <command interpreter="python">bcftools cat $rinput > $output  </command>
+  <command interpreter='python'>bcftools_wrapper.py bcftools cat $rinput > $output  </command>
 
   <inputs>
     <repeat name="rinput" title="BCF File">
@@ -39,4 +39,4 @@
 
     </help>
 
-</tool>
\ No newline at end of file
+</tool>