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author nilesh
date Fri, 12 Jul 2013 14:36:19 -0500
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1 <tool id="cmpfastq" name="Compare two fast files">
2 <description>Comparing two fastq files</description>
3 <requirements>
4 <requirement type="set_environment">CFQ_SCRIPT_PATH</requirement>
5 </requirements>
6 <command>\$CFQ_SCRIPT_PATH/cmpfastq $input1 $input2 $output1 $output2 $output3 $output4</command>
7 <inputs>
8 <param name="input1" type="data" format="fastq" label="Source file 1"/>
9 <param name="input2" type="data" format="fastq" label="Source file 2"/>
10 <!--<param name="input3" type="select" label="Option">
11 <option value="d">d</option>
12 <option value="h ">h</option>
13 </param> -->
14 </inputs>
15 <outputs>
16 <data format="txt" name="output1" label="Common file 1"/>
17 <data format="txt" name="output2" label="Common file 2"/>
18 <data format="txt" name="output3" label="Unique file 1"/>
19 <data format="txt" name="output4" label="Unique file 2"/>
20 </outputs>
21
22 <tests>
23 <test>
24 <!-- <param name="input" value="fa_gc_content_input.fa"/>
25 <output name="out_file1" file="fa_gc_content_output.txt"/> -->
26 </test>
27 </tests>
28
29 <help>
30 This tool computes GC content from a FASTA file.
31 </help>
32
33 </tool>