Mercurial > repos > nilesh > cmpfastq
comparison cmpfastq.xml @ 1:54ab39950f59 default tip
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author | nilesh |
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date | Fri, 12 Jul 2013 14:36:19 -0500 |
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0:177470e28e5f | 1:54ab39950f59 |
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1 <tool id="cmpfastq" name="Compare two fast files"> | |
2 <description>Comparing two fastq files</description> | |
3 <requirements> | |
4 <requirement type="set_environment">CFQ_SCRIPT_PATH</requirement> | |
5 </requirements> | |
6 <command>\$CFQ_SCRIPT_PATH/cmpfastq $input1 $input2 $output1 $output2 $output3 $output4</command> | |
7 <inputs> | |
8 <param name="input1" type="data" format="fastq" label="Source file 1"/> | |
9 <param name="input2" type="data" format="fastq" label="Source file 2"/> | |
10 <!--<param name="input3" type="select" label="Option"> | |
11 <option value="d">d</option> | |
12 <option value="h ">h</option> | |
13 </param> --> | |
14 </inputs> | |
15 <outputs> | |
16 <data format="txt" name="output1" label="Common file 1"/> | |
17 <data format="txt" name="output2" label="Common file 2"/> | |
18 <data format="txt" name="output3" label="Unique file 1"/> | |
19 <data format="txt" name="output4" label="Unique file 2"/> | |
20 </outputs> | |
21 | |
22 <tests> | |
23 <test> | |
24 <!-- <param name="input" value="fa_gc_content_input.fa"/> | |
25 <output name="out_file1" file="fa_gc_content_output.txt"/> --> | |
26 </test> | |
27 </tests> | |
28 | |
29 <help> | |
30 This tool computes GC content from a FASTA file. | |
31 </help> | |
32 | |
33 </tool> |