Mercurial > repos > nilesh > rseqc

annotate test-data/hg19.HouseKeepingGenes_30.bed @ 51:09846d5169fa draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 37fb1988971807c6a072e1afd98eeea02329ee83
author iuc
date Tue, 14 Mar 2017 10:23:21 -0400
parents f242ee103277
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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50
f242ee103277 planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/rseqc commit 91ad241aa3f34b70649d13a5f18611da7577a5ee
lparsons
parents:
diff changeset
1 chr1 100652477 100715409 NM_001918 0 - 100661810 100715376 0 11 9501,72,192,78,167,217,122,182,76,124,84, 0,19308,19523,23772,27895,29061,31704,43811,48514,53839,62848,
f242ee103277 planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/rseqc commit 91ad241aa3f34b70649d13a5f18611da7577a5ee
lparsons
parents:
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2 chr1 175913961 176176380 NM_022457 0 - 175914288 176176114 0 20 345,45,161,125,118,117,82,109,144,136,115,58,77,60,69,120,77,98,60,673, 0,2369,42117,43462,44536,82746,98360,98884,101355,136326,140950,171798,190184,191662,204180,218043,218989,231084,239807,261746,
f242ee103277 planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/rseqc commit 91ad241aa3f34b70649d13a5f18611da7577a5ee
lparsons
parents:
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3 chr1 150980972 151008189 NM_021222 0 + 150981108 151006710 0 8 175,93,203,185,159,95,159,1908, 0,9315,9970,16114,17018,18736,20289,25309,
f242ee103277 planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/rseqc commit 91ad241aa3f34b70649d13a5f18611da7577a5ee
lparsons
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4 chr1 6281252 6296044 NM_012405 0 - 6285139 6295971 0 5 4070,218,170,89,268, 0,10709,12281,13693,14524,
f242ee103277 planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/rseqc commit 91ad241aa3f34b70649d13a5f18611da7577a5ee
lparsons
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5 chr1 20959947 20978004 NM_032409 0 + 20960041 20977184 0 8 481,288,101,183,164,128,237,1078, 0,4387,6437,11035,12105,15050,15540,16979,
f242ee103277 planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/rseqc commit 91ad241aa3f34b70649d13a5f18611da7577a5ee
lparsons
parents:
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6 chr1 32479294 32509482 NM_006559 0 + 32479596 32508225 0 9 684,125,117,147,134,202,68,59,1355, 0,16604,17830,19494,23216,24141,24858,25821,28833,
f242ee103277 planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/rseqc commit 91ad241aa3f34b70649d13a5f18611da7577a5ee
lparsons
parents:
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7 chr1 27248212 27273362 NM_006600 0 + 27248339 27272672 0 9 208,78,204,66,117,195,84,119,742, 0,2367,19735,20031,20938,21149,23668,23846,24408,
f242ee103277 planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/rseqc commit 91ad241aa3f34b70649d13a5f18611da7577a5ee
lparsons
parents:
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8 chr1 31404352 31538564 NM_014676 0 - 31406057 31532413 0 22 1837,193,122,126,138,129,130,268,237,297,144,139,152,102,94,271,167,179,109,69,374,102, 0,5137,9645,10492,13840,18627,20728,22208,33168,34476,35661,36848,43145,48556,49806,60884,63548,74347,75488,97290,127698,134110,
f242ee103277 planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/rseqc commit 91ad241aa3f34b70649d13a5f18611da7577a5ee
lparsons
parents:
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9 chr1 36690016 36770957 NM_005119 0 + 36748164 36769618 0 12 90,103,168,903,705,173,112,85,188,199,144,1561, 0,34966,58117,61952,64644,66958,68182,69435,72167,76470,77137,79380,
f242ee103277 planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/rseqc commit 91ad241aa3f34b70649d13a5f18611da7577a5ee
lparsons
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10 chr1 46092975 46152302 NM_021639 0 - 46093927 46124759 0 13 1105,103,125,159,141,194,73,287,130,115,1042,45,219, 0,2272,3178,6185,6792,12906,15123,27239,27886,31724,32880,58272,59108,
f242ee103277 planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/rseqc commit 91ad241aa3f34b70649d13a5f18611da7577a5ee
lparsons
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11 chr1 44870959 45117396 NM_018150 0 + 44877769 45116447 0 15 243,742,133,46,102,43,44,133,97,87,56,79,109,75,1021, 0,6693,208877,217454,221009,227055,230257,230742,239410,239707,239933,240122,244373,244595,245416,
f242ee103277 planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/rseqc commit 91ad241aa3f34b70649d13a5f18611da7577a5ee
lparsons
parents:
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12 chr1 54519273 54565416 NM_153035 0 + 54520095 54562146 0 5 158,144,142,194,3459, 0,780,15155,34996,42684,
f242ee103277 planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/rseqc commit 91ad241aa3f34b70649d13a5f18611da7577a5ee
lparsons
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13 chr1 50906934 51425936 NM_007051 0 - 50907111 51425483 0 19 261,216,78,81,89,137,155,82,64,127,96,87,106,92,92,206,47,69,498, 0,34201,49325,50458,94106,98329,125814,141355,142389,143422,154858,214179,264523,297600,303421,346737,360368,416666,518504,
f242ee103277 planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/rseqc commit 91ad241aa3f34b70649d13a5f18611da7577a5ee
lparsons
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14 chr1 77554666 77685132 NM_005482 0 - 77558058 77685087 0 11 3509,85,173,111,118,97,112,136,92,54,138, 0,33293,65467,72313,72612,74864,77737,80278,117658,121454,130328,
f242ee103277 planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/rseqc commit 91ad241aa3f34b70649d13a5f18611da7577a5ee
lparsons
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15 chr1 94352589 94375012 NM_002061 0 - 94354545 94374719 0 7 2126,115,203,60,85,66,419, 0,7580,9584,10805,14551,17489,22004,
f242ee103277 planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/rseqc commit 91ad241aa3f34b70649d13a5f18611da7577a5ee
lparsons
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16 chr1 112162404 112259317 NM_002884 0 + 112233982 112251857 0 8 152,84,69,57,141,144,116,4265, 0,71551,75558,77658,83553,84560,89366,92648,
f242ee103277 planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/rseqc commit 91ad241aa3f34b70649d13a5f18611da7577a5ee
lparsons
parents:
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17 chr1 118472371 118503049 NM_006784 0 + 118475942 118502070 0 27 34,203,210,119,79,96,114,102,98,108,231,94,102,86,136,57,101,112,135,51,66,93,48,44,129,94,1135, 0,3539,4724,7020,8731,9728,11078,11375,12001,12688,13647,16337,18656,20002,20246,21085,22227,22548,22779,23197,23727,24258,24831,25566,27319,29161,29543,
f242ee103277 planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/rseqc commit 91ad241aa3f34b70649d13a5f18611da7577a5ee
lparsons
parents:
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18 chr1 156219014 156252620 NM_015327 0 - 156220377 156252471 0 22 1447,139,75,91,160,60,159,176,76,176,600,138,209,69,126,79,90,90,157,124,99,223, 0,1634,2179,3190,3695,4225,9781,11227,12109,14171,16557,17317,18246,18891,19066,23096,24137,25373,27861,28701,29712,33383,
f242ee103277 planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/rseqc commit 91ad241aa3f34b70649d13a5f18611da7577a5ee
lparsons
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19 chr1 180257351 180472022 NM_032360 0 - 180257497 180471401 0 8 301,31,90,106,83,97,65,843, 0,26475,109299,125149,141963,204052,207244,213828,
f242ee103277 planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/rseqc commit 91ad241aa3f34b70649d13a5f18611da7577a5ee
lparsons
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20 chr1 183441505 183523328 NM_173156 0 + 183441755 183521066 0 22 279,32,118,133,172,72,151,136,163,157,71,61,120,427,145,383,372,81,160,171,146,2376, 0,40466,43503,45317,54225,55585,56521,57027,60793,61305,64774,66009,68613,69705,71982,72559,73595,76837,77393,78380,78674,79447,
f242ee103277 planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/rseqc commit 91ad241aa3f34b70649d13a5f18611da7577a5ee
lparsons
parents:
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21 chr1 220141941 220220000 NM_004446 0 - 220142147 220219730 0 32 357,65,79,161,174,198,156,102,80,73,210,52,263,234,360,118,113,208,137,111,60,85,234,172,193,127,95,140,157,100,85,316, 0,458,3469,4638,9946,10818,11485,12156,12778,14172,14589,15606,18542,19990,28383,32538,36648,37506,38602,42346,49849,50395,51388,53747,55664,56532,61786,63787,64902,66314,71585,77743,
f242ee103277 planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/rseqc commit 91ad241aa3f34b70649d13a5f18611da7577a5ee
lparsons
parents:
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22 chr1 229577043 229644088 NM_018230 0 - 229577650 229643996 0 26 744,89,65,81,119,136,159,134,252,100,123,225,95,164,92,158,148,148,71,156,171,135,108,104,119,274, 0,3617,7829,9228,11228,16864,19314,22246,23327,24123,25337,29283,34341,36300,42757,45074,46169,48658,54198,54595,56839,58387,59459,60702,64743,66771,
f242ee103277 planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/rseqc commit 91ad241aa3f34b70649d13a5f18611da7577a5ee
lparsons
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23 chr1 1309109 1310818 NM_017900 0 - 1309180 1310136 0 4 173,446,86,285, 0,270,975,1424,
f242ee103277 planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/rseqc commit 91ad241aa3f34b70649d13a5f18611da7577a5ee
lparsons
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24 chr1 9908333 9970316 NM_020248 0 - 9910775 9932122 0 6 2501,91,120,85,34,164, 0,22911,23693,29629,35429,61819,
f242ee103277 planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/rseqc commit 91ad241aa3f34b70649d13a5f18611da7577a5ee
lparsons
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25 chr1 10093040 10241296 NM_006048 0 + 10093728 10240014 0 27 712,187,136,88,145,229,142,101,115,84,57,117,99,114,199,139,100,128,99,236,127,145,135,192,175,147,1344, 0,39045,62478,68125,69965,72533,84476,86530,88979,93811,96409,97517,97732,99386,102005,104084,111957,113980,116201,118343,125373,128159,135153,138155,145661,146433,146912,
f242ee103277 planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/rseqc commit 91ad241aa3f34b70649d13a5f18611da7577a5ee
lparsons
parents:
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26 chr1 11126675 11159938 NM_002685 0 - 11126774 11159888 0 24 130,77,62,172,74,85,96,107,79,51,112,51,149,157,191,144,111,76,115,166,105,124,137,161, 0,1389,2026,2940,4281,5468,7612,10223,10746,10982,13092,13880,14145,14463,16069,20829,21181,21504,23935,24395,24874,29139,31401,33102,
f242ee103277 planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/rseqc commit 91ad241aa3f34b70649d13a5f18611da7577a5ee
lparsons
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27 chr1 10535002 10690815 NM_004565 0 + 10535023 10690044 0 9 57,48,85,129,86,103,98,92,1228, 0,20328,61267,124292,143386,148073,149394,152326,154585,
f242ee103277 planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/rseqc commit 91ad241aa3f34b70649d13a5f18611da7577a5ee
lparsons
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28 chr1 16576558 16678948 NM_018994 0 - 16577164 16641913 0 10 1722,117,57,97,111,154,135,117,267,199, 0,2224,3032,3571,5647,6542,44719,55739,65105,102191,
f242ee103277 planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/rseqc commit 91ad241aa3f34b70649d13a5f18611da7577a5ee
lparsons
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29 chr1 16174358 16266950 NM_015001 0 + 16174562 16265922 0 15 287,321,477,161,201,152,126,114,114,101,8176,483,195,159,1160, 0,24952,28338,61457,63237,68264,71062,71540,73006,74385,80227,89299,89948,90854,91432,
f242ee103277 planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/rseqc commit 91ad241aa3f34b70649d13a5f18611da7577a5ee
lparsons
parents:
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30 chr1 17866329 18024370 NM_018125 0 + 17907090 18023875 0 29 116,80,186,34,92,84,176,117,109,107,78,180,117,93,174,146,15,182,116,128,101,122,87,224,155,149,175,123,1028, 0,40718,47625,48611,62292,63673,67967,73223,76259,79504,82029,83161,84552,86121,87495,92486,94713,95000,98053,98727,100367,108719,114801,116044,116719,124612,147738,155323,157013,