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1 == RSeQC Galaxy Wrapper ==
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2
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3 This is a Galaxy wrapper for the RSeQC RNA-Seq QC package.
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4
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5 ** Installation **
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6
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7 Installation from a tool shed provides the necessary tool dependencies, R, numpy, and RSeQC.
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8
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9 Otherwise, make sure that R and the RSeQC scripts are in the path and run under the Galaxy environment.
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10 Move the xml files to a subdirectory of your tools directory and add lines in tool_conf.xml to point to them.
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11 Restart the Galaxy server.
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12
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13 Requires Python 2.7
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14
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15 ** Attribution **
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16
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17 The RSeQC package and associated documentation can be found at: http://rseqc.sourceforge.net/
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18
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19 The galaxy wrapper code was written by
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20 Nilesh Kavthekar, School of Engineering and Applied Sciences, University of Pennsylvania, Class of 2016
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21 Modified by
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22 Lance Parsons, Lewis-Sigler Institute for Integrative Genomics, Princeton University,
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23 Bjorn Gruning, University of Freiburg, bjoern.gruening@gmail.com
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24 The development of the wrapper code is housed on BitBucket at: https://bitbucket.org/lance_parsons/rseqc_galaxy_wrapper
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