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annotate tool_dependencies.xml @ 38:a447651be8ee

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Reupload 2.3.7 fix (tarball upload issues)
author lparsons
date Wed, 23 Jul 2014 10:14:01 -0400
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="R" version="3.0.1">
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4 <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="numpy" version="1.7.1">
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7 <repository changeset_revision="ef12a3a11d5b" name="package_numpy_1_7" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" />
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8 </package>
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9 <package name="rseqc" version="2.3.7">
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10 <install version="1.0">
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11 <actions>
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12 <action type="download_by_url">http://sourceforge.net/projects/rseqc/files/RSeQC-2.3.7.tar.gz</action>
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13 <action type="make_directory">$INSTALL_DIR/lib/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise -->
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14 <action type="make_directory">$INSTALL_DIR/lib64/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise -->
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15 <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin</action>
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16 <action type="set_environment">
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17 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
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18 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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19 </action>
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20 </actions>
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21 </install>
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22 <readme>
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23 RSeQC version 2.3.7, documentation available at http://dldcc-web.brc.bcm.edu/lilab/liguow/CGI/rseqc/_build/html/index.html.
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24 Requires gcc and python 2.7.
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25 </readme>
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26 </package>
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27
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28 </tool_dependency>