Mercurial > repos > nilesh > rseqc
annotate test-data/output.GC_plot_r @ 63:27e16a30667a draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit d7544582d5599c67a284faf9232cd2ccc4daa1de
| author | iuc | 
|---|---|
| date | Tue, 09 Apr 2024 11:24:55 +0000 | 
| parents | 1421603cc95b | 
| children | 
| rev | line source | 
|---|---|
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59
 
dbedfc5f5a3c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 247059e2527b66f1dbecf1e61496daef921040c3"
 
iuc 
parents:  
diff
changeset
 | 
1 pdf("output.GC_plot.pdf") | 
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60
 
1421603cc95b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 1dfe55ca83685cadb0ce8f6ebbd8c13232376d1d
 
iuc 
parents: 
59 
diff
changeset
 | 
2 gc=rep(c(56.86,68.63,60.78,27.45,37.25,58.82,78.43,50.98,43.14,49.02,52.94,62.75,47.06,41.18,54.90,29.41,39.22,35.29),times=c(7,1,3,2,2,1,1,3,2,2,3,1,5,3,1,1,1,1)) | 
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59
 
dbedfc5f5a3c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 247059e2527b66f1dbecf1e61496daef921040c3"
 
iuc 
parents:  
diff
changeset
 | 
3 hist(gc,probability=T,breaks=100,xlab="GC content (%)",ylab="Density of Reads",border="blue",main="") | 
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dbedfc5f5a3c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 247059e2527b66f1dbecf1e61496daef921040c3"
 
iuc 
parents:  
diff
changeset
 | 
4 dev.off() | 
