rseqc: infer_experiment.xml annotate

annotate infer_experiment.xml @ 35:ff21a055413b

Create lib directories during install, added README.txt

author	lparsons
date	Tue, 22 Jul 2014 16:52:10 -0400
parents	580ee0c4bc4e
children

rev	line source
32 580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	1 <tool id="rseqc_infer_experiment" name="Infer Experiment" version="1.1">
580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	2 <description>speculates how RNA-seq were configured</description>
580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	3 <requirements>
580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	4 <requirement type="package" version="1.7.1">numpy</requirement>
580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	5 <requirement type="package" version="2.3.7">rseqc</requirement>
580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	6 </requirements>
580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	7 <command>
580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	8 infer_experiment.py -i $input -r $refgene
580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	9 #if $sample_size.boolean
580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	10 -s $sample_size.size
580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	11 #end if
580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	12
580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	13 > $output
580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	14 </command>
31 cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	15 <stdio>
cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	16 <exit_code range="1:" level="fatal" description="An error occured during execution, see stderr and stdout for more information" />
cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	17 <regex match="[Ee]rror" source="both" description="An error occured during execution, see stderr and stdout for more information" />
cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	18 </stdio>
32 580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	19 <inputs>
580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	20 <param name="input" type="data" format="bam,sam" label="Input BAM/SAM file" />
580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	21 <param name="refgene" type="data" format="bed" label="Reference gene model in bed format" />
580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	22 <conditional name="sample_size">
580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	23 <param name="boolean" type="boolean" label="Modify usable sampled reads" value="false" />
580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	24 <when value="true">
580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	25 <param name="size" type="integer" label="Number of usable sampled reads (default = 200000)" value="200000" />
580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	26 </when>
580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	27 </conditional>
580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	28 </inputs>
580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	29 <outputs>
580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	30 <data format="txt" name="output" />
580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	31 </outputs>
580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	32 <help>
31 cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	33 infer_experiment.py
cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	34 +++++++++++++++++++
19 8dbd613bd835 Uploaded nilesh parents: diff changeset	35
31 cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	36 This program is used to speculate how RNA-seq sequencing were configured, especially how
cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	37 reads were stranded for strand-specific RNA-seq data, through comparing reads' mapping
cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	38 information to the underneath gene model.
19 8dbd613bd835 Uploaded nilesh parents: diff changeset	39
8dbd613bd835 Uploaded nilesh parents: diff changeset	40
8dbd613bd835 Uploaded nilesh parents: diff changeset	41 Inputs
8dbd613bd835 Uploaded nilesh parents: diff changeset	42 ++++++++++++++
8dbd613bd835 Uploaded nilesh parents: diff changeset	43
8dbd613bd835 Uploaded nilesh parents: diff changeset	44 Input BAM/SAM file
32 580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	45 Alignment file in BAM/SAM format.
19 8dbd613bd835 Uploaded nilesh parents: diff changeset	46
8dbd613bd835 Uploaded nilesh parents: diff changeset	47 Reference gene model
32 580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	48 Gene model in BED format.
19 8dbd613bd835 Uploaded nilesh parents: diff changeset	49
8dbd613bd835 Uploaded nilesh parents: diff changeset	50 Number of usable sampled reads (default=200000)
32 580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	51 Number of usable reads sampled from SAM/BAM file. More reads will give more accurate estimation, but make program little slower.
19 8dbd613bd835 Uploaded nilesh parents: diff changeset	52
31 cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	53 Outputs
cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	54 +++++++
19 8dbd613bd835 Uploaded nilesh parents: diff changeset	55
31 cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	56 For pair-end RNA-seq, there are two different
cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	57 ways to strand reads (such as Illumina ScriptSeq protocol):
19 8dbd613bd835 Uploaded nilesh parents: diff changeset	58
31 cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	59 1. 1++,1--,2+-,2-+
19 8dbd613bd835 Uploaded nilesh parents: diff changeset	60
31 cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	61 * read1 mapped to '+' strand indicates parental gene on '+' strand
cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	62 * read1 mapped to '-' strand indicates parental gene on '-' strand
cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	63 * read2 mapped to '+' strand indicates parental gene on '-' strand
cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	64 * read2 mapped to '-' strand indicates parental gene on '+' strand
cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	65
cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	66 2. 1+-,1-+,2++,2--
cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	67
cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	68 * read1 mapped to '+' strand indicates parental gene on '-' strand
cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	69 * read1 mapped to '-' strand indicates parental gene on '+' strand
cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	70 * read2 mapped to '+' strand indicates parental gene on '+' strand
cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	71 * read2 mapped to '-' strand indicates parental gene on '-' strand
19 8dbd613bd835 Uploaded nilesh parents: diff changeset	72
8dbd613bd835 Uploaded nilesh parents: diff changeset	73 For single-end RNA-seq, there are also two different ways to strand reads:
8dbd613bd835 Uploaded nilesh parents: diff changeset	74
31 cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	75 1. ++,--
cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	76
cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	77 * read mapped to '+' strand indicates parental gene on '+' strand
cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	78 * read mapped to '-' strand indicates parental gene on '-' strand
cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	79
cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	80 2. +-,-+
cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	81
cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	82 * read mapped to '+' strand indicates parental gene on '-' strand
cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	83 * read mapped to '-' strand indicates parental gene on '+' strand
cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	84
19 8dbd613bd835 Uploaded nilesh parents: diff changeset	85
8dbd613bd835 Uploaded nilesh parents: diff changeset	86 Example Output
8dbd613bd835 Uploaded nilesh parents: diff changeset	87 ++++++++++++++
8dbd613bd835 Uploaded nilesh parents: diff changeset	88
8dbd613bd835 Uploaded nilesh parents: diff changeset	89 Example1 ::
8dbd613bd835 Uploaded nilesh parents: diff changeset	90
32 580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	91 =========================================================
580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	92 This is PairEnd Data ::
19 8dbd613bd835 Uploaded nilesh parents: diff changeset	93
32 580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	94 Fraction of reads explained by "1++,1--,2+-,2-+": 0.4992
580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	95 Fraction of reads explained by "1+-,1-+,2++,2--": 0.5008
580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	96 Fraction of reads explained by other combinations: 0.0000
580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	97 =========================================================
19 8dbd613bd835 Uploaded nilesh parents: diff changeset	98
8dbd613bd835 Uploaded nilesh parents: diff changeset	99 Conclusion: We can infer that this is NOT a strand specific because 50% of reads can be explained by "1++,1--,2+-,2-+", while the other 50% can be explained by "1+-,1-+,2++,2--".
8dbd613bd835 Uploaded nilesh parents: diff changeset	100
8dbd613bd835 Uploaded nilesh parents: diff changeset	101 Example2 ::
8dbd613bd835 Uploaded nilesh parents: diff changeset	102
32 580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	103 ============================================================
580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	104 This is PairEnd Data
19 8dbd613bd835 Uploaded nilesh parents: diff changeset	105
32 580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	106 Fraction of reads explained by "1++,1--,2+-,2-+": 0.9644 ::
580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	107 Fraction of reads explained by "1+-,1-+,2++,2--": 0.0356
580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	108 Fraction of reads explained by other combinations: 0.0000
580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	109 ============================================================
580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	110
19 8dbd613bd835 Uploaded nilesh parents: diff changeset	111 Conclusion: We can infer that this is a strand-specific RNA-seq data. strandness of read1 is consistent with that of gene model, while strandness of read2 is opposite to the strand of reference gene model.
8dbd613bd835 Uploaded nilesh parents: diff changeset	112
8dbd613bd835 Uploaded nilesh parents: diff changeset	113 Example3 ::
8dbd613bd835 Uploaded nilesh parents: diff changeset	114
32 580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	115 =========================================================
580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	116 This is SingleEnd Data ::
19 8dbd613bd835 Uploaded nilesh parents: diff changeset	117
32 580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	118 Fraction of reads explained by "++,--": 0.9840 ::
580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	119 Fraction of reads explained by "+-,-+": 0.0160
580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	120 Fraction of reads explained by other combinations: 0.0000
580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	121 =========================================================
19 8dbd613bd835 Uploaded nilesh parents: diff changeset	122
8dbd613bd835 Uploaded nilesh parents: diff changeset	123 Conclusion: This is single-end, strand specific RNA-seq data. Strandness of reads are concordant with strandness of reference gene.
31 cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	124
cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	125
cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	126 -----
cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	127
cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	128 About RSeQC
cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	129 +++++++++++
cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	130
cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	131 The RSeQC_ package provides a number of useful modules that can comprehensively evaluate high throughput sequence data especially RNA-seq data. "Basic modules" quickly inspect sequence quality, nucleotide composition bias, PCR bias and GC bias, while "RNA-seq specific modules" investigate sequencing saturation status of both splicing junction detection and expression estimation, mapped reads clipping profile, mapped reads distribution, coverage uniformity over gene body, reproducibility, strand specificity and splice junction annotation.
cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	132
cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	133 The RSeQC package is licensed under the GNU GPL v3 license.
cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	134
cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	135 .. image:: http://rseqc.sourceforge.net/_static/logo.png
cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	136
cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	137 .. _RSeQC: http://rseqc.sourceforge.net/
cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	138
cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	139
32 580ee0c4bc4e Fixes from Bjorn Gruning: create symlinks under $TMP and clean them up afterwards, replace R dependency with the Tool Shed R3 package, add --install-scripts, prepend tool-ids with rseqc lparsons parents: 31 diff changeset	140 </help>
31 cc5eaa9376d8 Lance's updates nilesh parents: 19 diff changeset	141 </tool>

Mercurial > repos > nilesh > rseqc

annotate infer_experiment.xml @ 35:ff21a055413b