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comparison bam_stat.xml @ 60:1421603cc95b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 1dfe55ca83685cadb0ce8f6ebbd8c13232376d1d
author iuc
date Sat, 26 Nov 2022 15:19:14 +0000
parents dbedfc5f5a3c
children 5968573462fa
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59:dbedfc5f5a3c 60:1421603cc95b
1 <tool id="rseqc_bam_stat" name="BAM/SAM Mapping Stats" version="@TOOL_VERSION@"> 1 <tool id="rseqc_bam_stat" name="BAM/SAM Mapping Stats" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@GALAXY_VERSION@">
2 <description> 2 <description>
3 reads mapping statistics for a provided BAM or SAM file. 3 reads mapping statistics for a provided BAM or SAM file.
4 </description> 4 </description>
5 <expand macro="bio_tools"/> 5 <expand macro="bio_tools"/>
6 <macros> 6 <macros>
12 <expand macro="stdio" /> 12 <expand macro="stdio" />
13 13
14 <version_command><![CDATA[bam_stat.py --version]]></version_command> 14 <version_command><![CDATA[bam_stat.py --version]]></version_command>
15 15
16 <command><![CDATA[ 16 <command><![CDATA[
17 bam_stat.py -i '${input}' -q ${mapq} > '${output}' 17 @BAM_SAM_INPUTS@
18 bam_stat.py -i 'input.${extension}' -q ${mapq} > '${output}'
18 ]]> 19 ]]>
19 </command> 20 </command>
20 21
21 <inputs> 22 <inputs>
22 <expand macro="bam_param" /> 23 <expand macro="bam_sam_param" />
23 <expand macro="mapq_param" /> 24 <expand macro="mapq_param" />
24 </inputs> 25 </inputs>
25 26
26 <outputs> 27 <outputs>
27 <data format="txt" name="output" /> 28 <data format="txt" name="output" />