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comparison read_NVC.xml @ 60:1421603cc95b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 1dfe55ca83685cadb0ce8f6ebbd8c13232376d1d
author iuc
date Sat, 26 Nov 2022 15:19:14 +0000
parents dbedfc5f5a3c
children 5968573462fa
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59:dbedfc5f5a3c 60:1421603cc95b
1 <tool id="rseqc_read_NVC" name="Read NVC" version="@TOOL_VERSION@"> 1 <tool id="rseqc_read_NVC" name="Read NVC" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@GALAXY_VERSION@">
2 <description>to check the nucleotide composition bias</description> 2 <description>to check the nucleotide composition bias</description>
3 <expand macro="bio_tools"/> 3 <expand macro="bio_tools"/>
4 <macros> 4 <macros>
5 <import>rseqc_macros.xml</import> 5 <import>rseqc_macros.xml</import>
6 </macros> 6 </macros>
10 <expand macro="stdio" /> 10 <expand macro="stdio" />
11 11
12 <version_command><![CDATA[read_NVC.py --version]]></version_command> 12 <version_command><![CDATA[read_NVC.py --version]]></version_command>
13 13
14 <command><![CDATA[ 14 <command><![CDATA[
15 @BAM_SAM_INPUTS@
15 read_NVC.py 16 read_NVC.py
16 --input-file '${input}' 17 --input-file 'input.${extension}'
17 --out-prefix output 18 --out-prefix output
18 ${nx} 19 ${nx}
19 --mapq ${mapq} 20 --mapq ${mapq}
20 ]]> 21 ]]>
21 </command> 22 </command>