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comparison read_duplication.xml @ 60:1421603cc95b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 1dfe55ca83685cadb0ce8f6ebbd8c13232376d1d
author iuc
date Sat, 26 Nov 2022 15:19:14 +0000
parents dbedfc5f5a3c
children 5968573462fa
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59:dbedfc5f5a3c 60:1421603cc95b
1 <tool id="rseqc_read_duplication" name="Read Duplication" version="@TOOL_VERSION@"> 1 <tool id="rseqc_read_duplication" name="Read Duplication" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@GALAXY_VERSION@">
2 <description>determines reads duplication rate with sequence-based and mapping-based strategies</description> 2 <description>determines reads duplication rate with sequence-based and mapping-based strategies</description>
3 <expand macro="bio_tools"/> 3 <expand macro="bio_tools"/>
4 <macros> 4 <macros>
5 <import>rseqc_macros.xml</import> 5 <import>rseqc_macros.xml</import>
6 </macros> 6 </macros>
10 <expand macro="stdio" /> 10 <expand macro="stdio" />
11 11
12 <version_command><![CDATA[read_duplication.py --version]]></version_command> 12 <version_command><![CDATA[read_duplication.py --version]]></version_command>
13 13
14 <command><![CDATA[ 14 <command><![CDATA[
15 read_duplication.py -i '${input}' -o output -u ${upLimit} -q ${mapq} 15 @BAM_SAM_INPUTS@
16 read_duplication.py -i 'input.${extension}' -o output -u ${upLimit} -q ${mapq}
16 ]]> 17 ]]>
17 </command> 18 </command>
18 19
19 <inputs> 20 <inputs>
20 <expand macro="bam_sam_param" /> 21 <expand macro="bam_sam_param" />