Mercurial > repos > nilesh > rseqc
comparison README.txt @ 43:378d05d35705 draft
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| author | lparsons |
|---|---|
| date | Wed, 23 Jul 2014 10:58:28 -0400 |
| parents | a447651be8ee |
| children | f242ee103277 |
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| 1 == RSeQC Galaxy Wrapper == | |
| 2 | |
| 3 This is a Galaxy wrapper for the RSeQC RNA-Seq QC package. | |
| 4 | |
| 5 ** Installation ** | |
| 6 | |
| 7 Installation from a tool shed provides the necessary tool dependencies, R, numpy, and RSeQC. | |
| 8 | |
| 9 Otherwise, make sure that R and the RSeQC scripts are in the path and run under the Galaxy environment. | |
| 10 Move the xml files to a subdirectory of your tools directory and add lines in tool_conf.xml to point to them. | |
| 11 Restart the Galaxy server. | |
| 12 | |
| 13 Requires Python 2.7 | |
| 14 | |
| 15 ** Attribution ** | |
| 16 | |
| 17 The RSeQC package and associated documentation can be found at: http://rseqc.sourceforge.net/ | |
| 18 | |
| 19 The galaxy wrapper code was written by | |
| 20 Nilesh Kavthekar, School of Engineering and Applied Sciences, University of Pennsylvania, Class of 2016 | |
| 21 Modified by | |
| 22 Lance Parsons, Lewis-Sigler Institute for Integrative Genomics, Princeton University, | |
| 23 Bjorn Gruning, University of Freiburg, bjoern.gruening@gmail.com | |
| 24 The development of the wrapper code is housed on BitBucket at: https://bitbucket.org/lance_parsons/rseqc_galaxy_wrapper |