Mercurial > repos > nilesh > rseqc
comparison junction_annotation.xml @ 62:473382134e56 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit ccb6f7edba5492f4750ef8a59c4f91eb67fdbbec
author | iuc |
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date | Wed, 22 Feb 2023 15:06:01 +0000 |
parents | 5968573462fa |
children | 27e16a30667a |
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61:5968573462fa | 62:473382134e56 |
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49 <tests> | 49 <tests> |
50 <test> | 50 <test> |
51 <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam" /> | 51 <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam" /> |
52 <param name="refgene" value="hg19_RefSeq_chr1_1-100000.bed" ftype="bed12"/> | 52 <param name="refgene" value="hg19_RefSeq_chr1_1-100000.bed" ftype="bed12"/> |
53 <param name="rscript_output" value="true" /> | 53 <param name="rscript_output" value="true" /> |
54 <output name="outputxls" file="output.junction.xls" /> | 54 <output name="outputxls" file="output.junction.xls" ftype="tabular"/> |
55 <output name="outputr" file="output.junction_plot_r" /> | 55 <output name="outputr" file="output.junction_plot_r" /> |
56 <output name="outputpdf" file="output.splice_events.pdf" compare="sim_size" /> | 56 <output name="outputpdf" file="output.splice_events.pdf" compare="sim_size" /> |
57 <output name="outputjpdf" file="output.splice_junction.pdf" compare="sim_size" /> | 57 <output name="outputjpdf" file="output.splice_junction.pdf" compare="sim_size" /> |
58 <output name="stats" file="output.splice_junction.txt" ftype="txt" lines_diff="2" /> | 58 <output name="stats" file="output.splice_junction.txt" ftype="txt" lines_diff="2" /> |
59 </test> | 59 </test> |