Mercurial > repos > nilesh > rseqc

comparison read_duplication.xml @ 62:473382134e56 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit ccb6f7edba5492f4750ef8a59c4f91eb67fdbbec
author iuc
date Wed, 22 Feb 2023 15:06:01 +0000
parents 5968573462fa
children 27e16a30667a
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61:5968573462fa 62:473382134e56
24 <expand macro="rscript_output_param" /> 24 <expand macro="rscript_output_param" />
25 </inputs> 25 </inputs>
26 26
27 <outputs> 27 <outputs>
28 <expand macro="pdf_output_data" filename="output.DupRate_plot.pdf" label="${tool.name} on ${on_string}: plot (PDF)"/> 28 <expand macro="pdf_output_data" filename="output.DupRate_plot.pdf" label="${tool.name} on ${on_string}: plot (PDF)"/>
29 <data format="xls" name="outputxls" from_work_dir="output.pos.DupRate.xls" label="${tool.name} on ${on_string}: positon (XLS)"/> 29 <data format="tabular" name="outputxls" from_work_dir="output.pos.DupRate.xls" label="${tool.name} on ${on_string}: positon"/>
30 <data format="xls" name="outputseqxls" from_work_dir="output.seq.DupRate.xls" label="${tool.name} on ${on_string}: sequences (XLS)"/> 30 <data format="tabular" name="outputseqxls" from_work_dir="output.seq.DupRate.xls" label="${tool.name} on ${on_string}: sequences"/>
31 <expand macro="rscript_output_data" filename="output.DupRate_plot.r" label="${tool.name} on ${on_string}: Rscript"/> 31 <expand macro="rscript_output_data" filename="output.DupRate_plot.r" label="${tool.name} on ${on_string}: Rscript"/>
32 </outputs> 32 </outputs>
33 33
34 <tests> 34 <tests>
35 <test> 35 <test>
36 <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam" /> 36 <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam" />
37 <param name="rscript_output" value="true" /> 37 <param name="rscript_output" value="true" />
38 <output name="outputxls" file="output.pos.DupRate.xls" /> 38 <output name="outputxls" file="output.pos.DupRate.xls" ftype="tabular"/>
39 <output name="outputseqxls" file="output.seq.DupRate.xls" /> 39 <output name="outputseqxls" file="output.seq.DupRate.xls" ftype="tabular"/>
40 <output name="outputr" file="output.DupRate_plot_r" /> 40 <output name="outputr" file="output.DupRate_plot_r" />
41 <output name="outputpdf" file="output.DupRate_plot.pdf" compare="sim_size" /> 41 <output name="outputpdf" file="output.DupRate_plot.pdf" compare="sim_size" />
42 </test> 42 </test>
43 </tests> 43 </tests>
44 44