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comparison bam2wig.xml @ 61:5968573462fa draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 8a91236cee4d408ae2b53a3e9b6daebc332d631a
author iuc
date Sat, 10 Dec 2022 11:23:05 +0000
parents 1421603cc95b
children 27e16a30667a
comparison
equal deleted inserted replaced
60:1421603cc95b 61:5968573462fa
1 <tool id="rseqc_bam2wig" name="BAM to Wiggle" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@GALAXY_VERSION@"> 1 <tool id="rseqc_bam2wig" name="BAM to Wiggle" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@GALAXY_VERSION@">
2 <description> 2 <description>
3 converts all types of RNA-seq data from .bam to .wig 3 converts all types of RNA-seq data from .bam to .wig
4 </description> 4 </description>
5 <expand macro="bio_tools"/>
6 <macros> 5 <macros>
7 <import>rseqc_macros.xml</import> 6 <import>rseqc_macros.xml</import>
8 </macros> 7 </macros>
8
9 <expand macro="bio_tools"/>
9 10
10 <expand macro="requirements" /> 11 <expand macro="requirements" />
11 12
12 <expand macro="stdio" /> 13 <expand macro="stdio" />
13 14
61 62
62 <outputs> 63 <outputs>
63 <data format="wig" name="output" from_work_dir="outfile.wig"> 64 <data format="wig" name="output" from_work_dir="outfile.wig">
64 <filter>strand_type['strand_specific'] == 'none'</filter> 65 <filter>strand_type['strand_specific'] == 'none'</filter>
65 </data> 66 </data>
66 <data format="wig" name="outputfwd" from_work_dir="outfile.Forward.wig" label="${tool.name} on ${on_string} (Forward Reads)"> 67 <data format="wig" name="outputfwd" from_work_dir="outfile.Forward.wig" label="${tool.name} on ${on_string}: forward reads">
67 <filter>strand_type['strand_specific'] != 'none'</filter> 68 <filter>strand_type['strand_specific'] != 'none'</filter>
68 </data> 69 </data>
69 <data format="wig" name="outputrv" from_work_dir="outfile.Reverse.wig" label="${tool.name} on ${on_string} (Reverse Reads)"> 70 <data format="wig" name="outputrv" from_work_dir="outfile.Reverse.wig" label="${tool.name} on ${on_string}: reverse reads">
70 <filter>strand_type['strand_specific'] != 'none'</filter> 71 <filter>strand_type['strand_specific'] != 'none'</filter>
71 </data> 72 </data>
72 </outputs> 73 </outputs>
73 74
74 <tests> 75 <tests>