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comparison bam_stat.xml @ 61:5968573462fa draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 8a91236cee4d408ae2b53a3e9b6daebc332d631a
author iuc
date Sat, 10 Dec 2022 11:23:05 +0000
parents 1421603cc95b
children 27e16a30667a
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60:1421603cc95b 61:5968573462fa
1 <tool id="rseqc_bam_stat" name="BAM/SAM Mapping Stats" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@GALAXY_VERSION@"> 1 <tool id="rseqc_bam_stat" name="BAM/SAM Mapping Stats" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@GALAXY_VERSION@">
2 <description> 2 <description>
3 reads mapping statistics for a provided BAM or SAM file. 3 reads mapping statistics for a provided BAM or SAM file.
4 </description> 4 </description>
5 <expand macro="bio_tools"/>
6 <macros> 5 <macros>
7 <import>rseqc_macros.xml</import> 6 <import>rseqc_macros.xml</import>
8 </macros> 7 </macros>
8
9 <expand macro="bio_tools"/>
9 10
10 <expand macro="requirements" /> 11 <expand macro="requirements" />
11 12
12 <expand macro="stdio" /> 13 <expand macro="stdio" />
13 14
23 <expand macro="bam_sam_param" /> 24 <expand macro="bam_sam_param" />
24 <expand macro="mapq_param" /> 25 <expand macro="mapq_param" />
25 </inputs> 26 </inputs>
26 27
27 <outputs> 28 <outputs>
28 <data format="txt" name="output" /> 29 <data format="txt" name="output" label="${tool.name} on ${on_string}: stats"/>
29 </outputs> 30 </outputs>
30 31
31 <tests> 32 <tests>
32 <test> 33 <test>
33 <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam" /> 34 <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam" />