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comparison read_GC.xml @ 61:5968573462fa draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 8a91236cee4d408ae2b53a3e9b6daebc332d631a
author iuc
date Sat, 10 Dec 2022 11:23:05 +0000
parents 1421603cc95b
children 473382134e56
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60:1421603cc95b 61:5968573462fa
1 <tool id="rseqc_read_GC" name="Read GC" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@GALAXY_VERSION@"> 1 <tool id="rseqc_read_GC" name="Read GC" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@GALAXY_VERSION@">
2 <description>determines GC% and read count</description> 2 <description>determines GC% and read count</description>
3 <expand macro="bio_tools"/>
4 <macros> 3 <macros>
5 <import>rseqc_macros.xml</import> 4 <import>rseqc_macros.xml</import>
6 </macros> 5 </macros>
6 <expand macro="bio_tools"/>
7 7
8 <expand macro="requirements" /> 8 <expand macro="requirements" />
9 9
10 <expand macro="stdio" /> 10 <expand macro="stdio" />
11 11
25 <expand macro="mapq_param" /> 25 <expand macro="mapq_param" />
26 <expand macro="rscript_output_param" /> 26 <expand macro="rscript_output_param" />
27 </inputs> 27 </inputs>
28 28
29 <outputs> 29 <outputs>
30 <expand macro="pdf_output_data" filename="output.GC_plot.pdf" /> 30 <expand macro="pdf_output_data" filename="output.GC_plot.pdf" label="${tool.name} on ${on_string}: plot (PDF)"/>
31 <expand macro="xls_output_data" filename="output.GC.xls" /> 31 <expand macro="xls_output_data" filename="output.GC.xls" label="${tool.name} on ${on_string}: XLS"/>
32 <expand macro="rscript_output_data" filename="output.GC_plot.r" /> 32 <expand macro="rscript_output_data" filename="output.GC_plot.r" label="${tool.name} on ${on_string}: Rscript"/>
33 </outputs> 33 </outputs>
34 34
35 <tests> 35 <tests>
36 <test> 36 <test>
37 <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam" /> 37 <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam" />