Mercurial > repos > nilesh > rseqc

comparison RPKM_saturation.xml @ 59:dbedfc5f5a3c draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 247059e2527b66f1dbecf1e61496daef921040c3"
author iuc
date Sat, 18 Dec 2021 19:41:19 +0000
parents 5873cd7afb67
children 1421603cc95b
comparison
equal deleted inserted replaced
58:1a052c827e88 59:dbedfc5f5a3c
1 <tool id="rseqc_RPKM_saturation" name="RPKM Saturation" version="@WRAPPER_VERSION@.1"> 1 <tool id="rseqc_RPKM_saturation" name="RPKM Saturation" version="@TOOL_VERSION@.2">
2 <description>calculates raw count and RPKM values for transcript at exon, intron, and mRNA level</description> 2 <description>calculates raw count and RPKM values for transcript at exon, intron, and mRNA level</description>
3 3 <expand macro="bio_tools"/>
4 <macros> 4 <macros>
5 <import>rseqc_macros.xml</import> 5 <import>rseqc_macros.xml</import>
6 </macros> 6 </macros>
7 7
8 <expand macro="requirements" /> 8 <expand macro="requirements" />
31 '+-,-+' 31 '+-,-+'
32 #end if 32 #end if
33 #end if 33 #end if
34 34
35 -l ${percentileFloor} -u ${percentileCeiling} -s ${percentileStep} -c ${rpkmCutoff} 35 -l ${percentileFloor} -u ${percentileCeiling} -s ${percentileStep} -c ${rpkmCutoff}
36 ]]> 36 --mapq $mapq
37 </command> 37 ]]></command>
38 38
39 <inputs> 39 <inputs>
40 <expand macro="bam_param" /> 40 <expand macro="bam_param" />
41 <expand macro="refgene_param" /> 41 <expand macro="refgene_param" />
42 <expand macro="strand_type_param" /> 42 <expand macro="strand_type_param" />