Mercurial > repos > nilesh > rseqc

comparison clipping_profile.xml @ 59:dbedfc5f5a3c draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 247059e2527b66f1dbecf1e61496daef921040c3"
author iuc
date Sat, 18 Dec 2021 19:41:19 +0000
parents 09846d5169fa
children 1421603cc95b
comparison
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58:1a052c827e88 59:dbedfc5f5a3c
1 <tool id="rseqc_clipping_profile" name="Clipping Profile" version="@WRAPPER_VERSION@"> 1 <tool id="rseqc_clipping_profile" name="Clipping Profile" version="@TOOL_VERSION@">
2 <description> 2 <description>
3 estimates clipping profile of RNA-seq reads from BAM or SAM file 3 estimates clipping profile of RNA-seq reads from BAM or SAM file
4 </description> 4 </description>
5 5 <expand macro="bio_tools"/>
6 <macros> 6 <macros>
7 <import>rseqc_macros.xml</import> 7 <import>rseqc_macros.xml</import>
8 </macros> 8 </macros>
9 9
10 <expand macro="requirements" /> 10 <expand macro="requirements" />
40 <test> 40 <test>
41 <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam" /> 41 <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam" />
42 <param name="rscript_output" value="true" /> 42 <param name="rscript_output" value="true" />
43 <output name="outputpdf" file="output.clipping_profile.pdf" compare="sim_size" /> 43 <output name="outputpdf" file="output.clipping_profile.pdf" compare="sim_size" />
44 <output name="outputxls" file="output.clipping_profile.xls" /> 44 <output name="outputxls" file="output.clipping_profile.xls" />
45 <output name="outputr" file="output.clipping_profile.r" /> 45 <output name="outputr" file="output.clipping_profile_r" />
46 </test> 46 </test>
47 </tests> 47 </tests>
48 48
49 <help><![CDATA[ 49 <help><![CDATA[
50 clipping_profile.py 50 clipping_profile.py