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comparison inner_distance.xml @ 59:dbedfc5f5a3c draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 247059e2527b66f1dbecf1e61496daef921040c3"
author iuc
date Sat, 18 Dec 2021 19:41:19 +0000
parents f437057e46f1
children 1421603cc95b
comparison
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58:1a052c827e88 59:dbedfc5f5a3c
1 <tool id="rseqc_inner_distance" name="Inner Distance" version="@WRAPPER_VERSION@.1"> 1 <tool id="rseqc_inner_distance" name="Inner Distance" version="@TOOL_VERSION@.1">
2 <description>calculate the inner distance (or insert size) between two paired RNA reads</description> 2 <description>calculate the inner distance (or insert size) between two paired RNA reads</description>
3 3 <expand macro="bio_tools"/>
4 <macros> 4 <macros>
5 <import>rseqc_macros.xml</import> 5 <import>rseqc_macros.xml</import>
6 </macros> 6 </macros>
7 7
8 <expand macro="requirements" /> 8 <expand macro="requirements" />
40 </outputs> 40 </outputs>
41 41
42 <tests> 42 <tests>
43 <test> 43 <test>
44 <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam"/> 44 <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam"/>
45 <param name="refgene" value="hg19_RefSeq_chr1_1-100000.bed"/> 45 <param name="refgene" value="hg19_RefSeq_chr1_1-100000.bed" ftype="bed12"/>
46 <param name="rscript_output" value="true" /> 46 <param name="rscript_output" value="true" />
47 <output name="outputtxt" file="output.inner_distance.txt" /> 47 <output name="outputtxt" file="output.inner_distance.txt" />
48 <output name="outputfreqtxt" file="output.inner_distance_freq.txt" /> 48 <output name="outputfreqtxt" file="output.inner_distance_freq.txt" />
49 <output name="outputpdf" file="output.inner_distance_plot.pdf" compare="sim_size"/> 49 <output name="outputpdf" file="output.inner_distance_plot.pdf" compare="sim_size"/>
50 <output name="outputr" file="output.inner_distance_plot.r" /> 50 <output name="outputr" file="output.inner_distance_plot_r" />
51 </test> 51 </test>
52 </tests> 52 </tests>
53 53
54 <help><![CDATA[ 54 <help><![CDATA[
55 inner_distance.py 55 inner_distance.py