Mercurial > repos > nilesh > rseqc

comparison junction_annotation.xml @ 59:dbedfc5f5a3c draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 247059e2527b66f1dbecf1e61496daef921040c3"
author iuc
date Sat, 18 Dec 2021 19:41:19 +0000
parents 5873cd7afb67
children 1421603cc95b
comparison
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58:1a052c827e88 59:dbedfc5f5a3c
1 <tool id="rseqc_junction_annotation" name="Junction Annotation" version="@WRAPPER_VERSION@.1"> 1 <tool id="rseqc_junction_annotation" name="Junction Annotation" version="@TOOL_VERSION@.1">
2 <description>compares detected splice junctions to reference gene model</description> 2 <description>compares detected splice junctions to reference gene model</description>
3 3 <expand macro="bio_tools"/>
4 <macros> 4 <macros>
5 <import>rseqc_macros.xml</import> 5 <import>rseqc_macros.xml</import>
6 </macros> 6 </macros>
7 7
8 <expand macro="requirements"> 8 <expand macro="requirements">
43 </outputs> 43 </outputs>
44 44
45 <tests> 45 <tests>
46 <test> 46 <test>
47 <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam" /> 47 <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam" />
48 <param name="refgene" value="hg19_RefSeq_chr1_1-100000.bed" /> 48 <param name="refgene" value="hg19_RefSeq_chr1_1-100000.bed" ftype="bed12"/>
49 <param name="rscript_output" value="true" /> 49 <param name="rscript_output" value="true" />
50 <output name="outputxls" file="output.junction.xls" /> 50 <output name="outputxls" file="output.junction.xls" />
51 <output name="outputr" file="output.junction_plot.r" /> 51 <output name="outputr" file="output.junction_plot_r" />
52 <output name="outputpdf" file="output.splice_events.pdf" compare="sim_size" /> 52 <output name="outputpdf" file="output.splice_events.pdf" compare="sim_size" />
53 <output name="outputjpdf" file="output.splice_junction.pdf" compare="sim_size" /> 53 <output name="outputjpdf" file="output.splice_junction.pdf" compare="sim_size" />
54 </test> 54 </test>
55 </tests> 55 </tests>
56 56