Mercurial > repos > nilesh > rseqc

comparison mismatch_profile.xml @ 59:dbedfc5f5a3c draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 247059e2527b66f1dbecf1e61496daef921040c3"
author iuc
date Sat, 18 Dec 2021 19:41:19 +0000
parents 09846d5169fa
children 1421603cc95b
comparison
equal deleted inserted replaced
58:1a052c827e88 59:dbedfc5f5a3c
1 <tool id="rseqc_mismatch_profile" name="Mismatch Profile" version="@WRAPPER_VERSION@"> 1 <tool id="rseqc_mismatch_profile" name="Mismatch Profile" version="@TOOL_VERSION@">
2 <description> 2 <description>
3 calculates the distribution of mismatches across reads 3 calculates the distribution of mismatches across reads
4 </description> 4 </description>
5 5 <expand macro="bio_tools"/>
6 <macros> 6 <macros>
7 <import>rseqc_macros.xml</import> 7 <import>rseqc_macros.xml</import>
8 </macros> 8 </macros>
9 9
10 <expand macro="requirements" /> 10 <expand macro="requirements" />
37 <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam"/> 37 <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam"/>
38 <param name="readlength" value="101" /> 38 <param name="readlength" value="101" />
39 <param name="rscript_output" value="true" /> 39 <param name="rscript_output" value="true" />
40 <output name="outputpdf" file="output.mismatch_profile.pdf" compare="sim_size" /> 40 <output name="outputpdf" file="output.mismatch_profile.pdf" compare="sim_size" />
41 <output name="outputxls" file="output.mismatch_profile.xls"/> 41 <output name="outputxls" file="output.mismatch_profile.xls"/>
42 <output name="outputr" file="output.mismatch_profile.r"/> 42 <output name="outputr" file="output.mismatch_profile_r"/>
43 </test> 43 </test>
44 </tests> 44 </tests>
45 45
46 <help><![CDATA[ 46 <help><![CDATA[
47 mismatch_profile.py 47 mismatch_profile.py