Mercurial > repos > nilesh > rseqc

comparison read_NVC.xml @ 59:dbedfc5f5a3c draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 247059e2527b66f1dbecf1e61496daef921040c3"
author iuc
date Sat, 18 Dec 2021 19:41:19 +0000
parents 09846d5169fa
children 1421603cc95b
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58:1a052c827e88 59:dbedfc5f5a3c
1 <tool id="rseqc_read_NVC" name="Read NVC" version="@WRAPPER_VERSION@"> 1 <tool id="rseqc_read_NVC" name="Read NVC" version="@TOOL_VERSION@">
2 <description>to check the nucleotide composition bias</description> 2 <description>to check the nucleotide composition bias</description>
3 3 <expand macro="bio_tools"/>
4 <macros> 4 <macros>
5 <import>rseqc_macros.xml</import> 5 <import>rseqc_macros.xml</import>
6 </macros> 6 </macros>
7 7
8 <expand macro="requirements" /> 8 <expand macro="requirements" />
36 <tests> 36 <tests>
37 <test> 37 <test>
38 <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam" /> 38 <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam" />
39 <param name="rscript_output" value="true" /> 39 <param name="rscript_output" value="true" />
40 <output name="outputxls" file="output.NVC.xls" /> 40 <output name="outputxls" file="output.NVC.xls" />
41 <output name="outputr" file="output.NVC_plot.r" /> 41 <output name="outputr" file="output.NVC_plot_r" />
42 <output name="outputpdf" file="output.NVC_plot.pdf" compare="sim_size" /> 42 <output name="outputpdf" file="output.NVC_plot.pdf" compare="sim_size" />
43 </test> 43 </test>
44 </tests> 44 </tests>
45 45
46 <help><![CDATA[ 46 <help><![CDATA[